Mercurial > repos > biomonika > monika_mpileup

changeset 13:88acb2da975c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author biomonika
date Wed, 13 Aug 2014 16:38:12 -0400
parents a22d0a28d71f
children adcb5eed5795
files LINKYX_mpileup_wrapper.sh
diffstat 1 files changed, 0 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/LINKYX_mpileup_wrapper.sh	Wed Aug 13 16:34:29 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-#!/bin/bash
-results=$1;
-bam_file=$2;
-reference=$3;
-
-#samtools mpileup -uf $reference $2 >$results;
-samtools mpileup -uf $reference $2 | bcftools view -p 0.85 -cgv - | vcfutils.pl varFilter >$results
\ No newline at end of file