# HG changeset patch
# User biomonika
# Date 1407962292 14400
# Node ID 88acb2da975c1d565ca68212d646a5a08da90e9b
# Parent  a22d0a28d71fdba3e1dc7d7f8ba915edbad909f1
Deleted selected files

diff -r a22d0a28d71f -r 88acb2da975c LINKYX_mpileup_wrapper.sh
--- a/LINKYX_mpileup_wrapper.sh	Wed Aug 13 16:34:29 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-#!/bin/bash
-results=$1;
-bam_file=$2;
-reference=$3;
-
-#samtools mpileup -uf $reference $2 >$results;
-samtools mpileup -uf $reference $2 | bcftools view -p 0.85 -cgv - | vcfutils.pl varFilter >$results
\ No newline at end of file