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annotate readme.rst @ 90:b061185bcb83 draft

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Uploaded
author bernhardlutz
date Thu, 23 Jan 2014 14:53:46 -0500
parents c4a3a8999945
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1 Galaxy wrapper using R and RPy2
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2 ===============================
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3
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4 These wrappers are based on RPy1 versions included in Galaxy-Main and
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5 ported by John Chilton to RPy2. Please see the following Mail from
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6 galaxy-dev:
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7
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8 http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014694.html
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9
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10 Missing ports to RPy2:
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12 - rgenetics/rgQC.py
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13 - regVariation/rcve.py
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14 - ngs_simulation/ngs_simulation.py
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15 - metag_tools/short_reads_figure_high_quality_length.py
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16 - taxonomy/poisson2test.py
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17
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18 ToDo:
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19
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20 - add tool_dependencies.xml to RPy2 and R-3.0
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21 - testing
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22 - porting of missing tools
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25 ============
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26 Installation
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27 ============
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31 =======
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32 History
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33 =======
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34
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35
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36 - v0.1: no release yet
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40
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41 Wrapper Licence (MIT/BSD style)
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42 ===============================
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43
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44 Permission to use, copy, modify, and distribute this software and its
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45 documentation with or without modifications and for any purpose and
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46 without fee is hereby granted, provided that any copyright notices
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47 appear in all copies and that both those copyright notices and this
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48 permission notice appear in supporting documentation, and that the
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49 names of the contributors or copyright holders not be used in
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50 advertising or publicity pertaining to distribution of the software
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51 without specific prior permission.
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52
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53 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
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54 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
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55 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
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56 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
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57 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
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58 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
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59 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
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60 OR PERFORMANCE OF THIS SOFTWARE.
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