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annotate sort_rows.xml @ 26:f22a309187a3 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
author bgruening
date Fri, 16 Aug 2024 10:41:17 +0000
parents 5fef6d08de83
children
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f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
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1 <tool id="tp_sort_rows" name="Sort a row" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
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2 <description>according to their columns</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="creator"/>
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7 <requirements>
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8 <requirement type="package" version="3.12">python</requirement>
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9 </requirements>
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10 <command>
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11 <![CDATA[
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12 python -c 'for line in ( "\t".join(sorted(line.strip().split("\t"))) for line in open("$infile") ): print(line)' > '$outfile'
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13 ]]>
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14 </command>
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15 <inputs>
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16 <param format="tabular" name="infile" type="data" label="Tabular file that should be sorted"/>
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17 </inputs>
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18 <outputs>
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19 <data name="outfile" format_source="infile" metadata_source="infile"/>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="infile" value="sort_rows1.tabular" ftype="tabular" />
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24 <output name="outfile" file="sort_rows_results1.bed"/>
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25 </test>
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26 </tests>
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27 <help>
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28 <![CDATA[
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29 .. class:: infomark
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30
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31 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
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32
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33 **What it does**
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34
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35 That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns.
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37 ]]>
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38 </help>
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39 <expand macro="citations" />
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40 </tool>