diff sort_rows.xml @ 0:ec66f9d90ef0 draft

initial uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sort_rows.xml	Thu Sep 05 04:58:21 2013 -0400
@@ -0,0 +1,26 @@
+<tool id="sort_rows" name="Sort a row" version="0.0.1">
+  <description>according to their columns</description>
+  <command>python -c 'for line in ["\t".join(sorted(line.strip().split("\t"))) for line in open("$input").readlines() ]: print line' > $outfile</command>
+  <inputs>
+    <param format="tabular" name="input" type="data" label="Tabular file that should be sorted"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="outfile" metadata_source="input"/>
+  </outputs>
+  <options sanitize="False"/>
+  <tests>
+
+  </tests>
+  <help>
+
+.. class:: infomark
+
+**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
+
+**What it does**
+
+That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns.
+
+
+</help>
+</tool>