text_processing: replace_text_in

annotate replace_text_in_line.xml @ 26:f22a309187a3 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7

author	bgruening
date	Fri, 16 Aug 2024 10:41:17 +0000
parents	bed2226b90f7
children	08cdbfffce67

rev	line source
26 f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7 bgruening parents: 19 diff changeset	1 <tool id="tp_replace_in_line" name="Replace Text" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
3 7068d1548234 Uploaded bgruening parents: diff changeset	2 <description>in entire line</description>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	3 <macros>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	4 <import>macros.xml</import>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	5 </macros>
26 f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7 bgruening parents: 19 diff changeset	6 <expand macro="creator"/>
13 3c685c4106b3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 12 diff changeset	7 <requirements>
26 f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7 bgruening parents: 19 diff changeset	8 <requirement type="package" version="4.8">sed</requirement>
13 3c685c4106b3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 12 diff changeset	9 </requirements>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	10 <version_command>sed --version \| head -n 1</version_command>
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	11 <command>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	12 <![CDATA[
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	13 sed
18 1e974b82380d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 0ba37c1f33eeb1c77b4d9363d681fe522d9f7fe7 bgruening parents: 17 diff changeset	14 -r
1e974b82380d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 0ba37c1f33eeb1c77b4d9363d681fe522d9f7fe7 bgruening parents: 17 diff changeset	15 --sandbox
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	16 #for $replacement in $replacements:
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	17 -e
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	18 's/$replacement.find_pattern/$replacement.replace_pattern/g'
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	19 #end for
18 1e974b82380d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 0ba37c1f33eeb1c77b4d9363d681fe522d9f7fe7 bgruening parents: 17 diff changeset	20 '$infile'
1e974b82380d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 0ba37c1f33eeb1c77b4d9363d681fe522d9f7fe7 bgruening parents: 17 diff changeset	21 > '$outfile'
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	22 ]]>
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	23
3 7068d1548234 Uploaded bgruening parents: diff changeset	24 </command>
7068d1548234 Uploaded bgruening parents: diff changeset	25 <inputs>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	26 <param format="txt" name="infile" type="data" label="File to process" />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	27 <repeat name="replacements" title="Replacement" min="1">
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	28 <param name="find_pattern" type="text" size="20" label="Find pattern" help="Use simple text, or a valid regular expression (without backslashes // ) " >
3 7068d1548234 Uploaded bgruening parents: diff changeset	29 <sanitizer>
7068d1548234 Uploaded bgruening parents: diff changeset	30 <valid initial="string.printable">
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	31 <remove value="'"/>
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	32 <remove value="/"/>
3 7068d1548234 Uploaded bgruening parents: diff changeset	33 </valid>
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	34 <mapping initial="none">
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	35 <add source="'" target="'"'"'" />
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	36 <add source="/" target="\/"/>
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	37 </mapping>
3 7068d1548234 Uploaded bgruening parents: diff changeset	38 </sanitizer>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	39 </param>
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	40 <param name="replace_pattern" type="text" size="20" label="Replace with:" help="Use simple text, or & (ampersand) and \\1 \\2 \\3 to refer to matched text. See examples below." >
3 7068d1548234 Uploaded bgruening parents: diff changeset	41 <sanitizer>
7068d1548234 Uploaded bgruening parents: diff changeset	42 <valid initial="string.printable">
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	43 <remove value="'"/>
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	44 <remove value="/"/>
3 7068d1548234 Uploaded bgruening parents: diff changeset	45 </valid>
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	46 <mapping initial="none">
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	47 <add source="'" target="'"'"'" />
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	48 <add source="/" target="\/"/>
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	49 </mapping>
f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	50
3 7068d1548234 Uploaded bgruening parents: diff changeset	51 </sanitizer>
17 f2918761eaf3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f48156f03164bde1f1be4826b2f0a1f16dc2cd2f bgruening parents: 16 diff changeset	52
3 7068d1548234 Uploaded bgruening parents: diff changeset	53 </param>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	54 </repeat>
3 7068d1548234 Uploaded bgruening parents: diff changeset	55 </inputs>
7068d1548234 Uploaded bgruening parents: diff changeset	56 <outputs>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	57 <data name="outfile" format_source="infile" metadata_source="infile"/>
3 7068d1548234 Uploaded bgruening parents: diff changeset	58 </outputs>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	59 <tests>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	60 <test>
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	61 <param name="infile" value="replace_text_in_line1.txt" />
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	62 <param name="find_pattern" value="CTC." />
56e80527c482 Uploaded bgruening parents: 3 diff changeset	63 <param name="replace_pattern" value="FOOBAR" />
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	64 <output name="outfile" file="replace_text_in_line_results1.txt" />
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	65 </test>
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	66 <test>
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	67 <param name="infile" value="replace_text_in_line1.txt" />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	68 <repeat name="replacements">
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	69 <param name="find_pattern" value="CTC." />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	70 <param name="replace_pattern" value="FOOBAR" />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	71 </repeat>
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	72 <repeat name="replacements">
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	73 <param name="find_pattern" value="chr" />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	74 <param name="replace_pattern" value="domain" />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	75 </repeat>
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	76 <output name="outfile" file="replace_text_in_line_results2.txt" />
bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	77 </test>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	78 </tests>
3 7068d1548234 Uploaded bgruening parents: diff changeset	79 <help>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	80 <![CDATA[
3 7068d1548234 Uploaded bgruening parents: diff changeset	81 What it does
7068d1548234 Uploaded bgruening parents: diff changeset	82
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	83 This tool performs find & replace operation on a specified file.
3 7068d1548234 Uploaded bgruening parents: diff changeset	84
7068d1548234 Uploaded bgruening parents: diff changeset	85 .. class:: infomark
7068d1548234 Uploaded bgruening parents: diff changeset	86
7068d1548234 Uploaded bgruening parents: diff changeset	87 The pattern to find uses the extended regular expression syntax (same as running 'sed -r').
7068d1548234 Uploaded bgruening parents: diff changeset	88
7068d1548234 Uploaded bgruening parents: diff changeset	89 .. class:: infomark
7068d1548234 Uploaded bgruening parents: diff changeset	90
7068d1548234 Uploaded bgruening parents: diff changeset	91 TIP: If you need more complex patterns, use the sed tool.
7068d1548234 Uploaded bgruening parents: diff changeset	92
7068d1548234 Uploaded bgruening parents: diff changeset	93 -----
7068d1548234 Uploaded bgruening parents: diff changeset	94
7068d1548234 Uploaded bgruening parents: diff changeset	95 Examples of Find Patterns
7068d1548234 Uploaded bgruening parents: diff changeset	96
7068d1548234 Uploaded bgruening parents: diff changeset	97 - HELLO The word 'HELLO' (case sensitive).
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	98 - AG.T The letters A,G followed by any single character, followed by the letter T.
3 7068d1548234 Uploaded bgruening parents: diff changeset	99 - A{4,} Four or more consecutive A's.
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	100 - chr2[012]\\t The words 'chr20' or 'chr21' or 'chr22' followed by a tab character.
3 7068d1548234 Uploaded bgruening parents: diff changeset	101 - hsa-mir-([^ ]+) The text 'hsa-mir-' followed by one-or-more non-space characters. When using parenthesis, the matched content of the parenthesis can be accessed with \1 in the replace pattern.
7068d1548234 Uploaded bgruening parents: diff changeset	102
7068d1548234 Uploaded bgruening parents: diff changeset	103
7068d1548234 Uploaded bgruening parents: diff changeset	104 Examples of Replace Patterns
7068d1548234 Uploaded bgruening parents: diff changeset	105
7068d1548234 Uploaded bgruening parents: diff changeset	106 - WORLD The word 'WORLD' will be placed whereever the find pattern was found.
14 7725ab6dab67 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n' bgruening parents: 13 diff changeset	107 - FOO-&-BAR Each time the find pattern is found, it will be surrounded with 'FOO-' at the beginning and '-BAR' at the end. & (ampersand) represents the matched find pattern.
3 7068d1548234 Uploaded bgruening parents: diff changeset	108 - \\1 The text which matched the first parenthesis in the Find Pattern.
7068d1548234 Uploaded bgruening parents: diff changeset	109
7068d1548234 Uploaded bgruening parents: diff changeset	110
7068d1548234 Uploaded bgruening parents: diff changeset	111 -----
7068d1548234 Uploaded bgruening parents: diff changeset	112
7068d1548234 Uploaded bgruening parents: diff changeset	113 Example 1
7068d1548234 Uploaded bgruening parents: diff changeset	114
7068d1548234 Uploaded bgruening parents: diff changeset	115 Find Pattern: HELLO
7068d1548234 Uploaded bgruening parents: diff changeset	116 Replace Pattern: WORLD
7068d1548234 Uploaded bgruening parents: diff changeset	117
7068d1548234 Uploaded bgruening parents: diff changeset	118 Every time the word HELLO is found, it will be replaced with the word WORLD.
7068d1548234 Uploaded bgruening parents: diff changeset	119
7068d1548234 Uploaded bgruening parents: diff changeset	120
7068d1548234 Uploaded bgruening parents: diff changeset	121 -----
7068d1548234 Uploaded bgruening parents: diff changeset	122
7068d1548234 Uploaded bgruening parents: diff changeset	123 Example 2
7068d1548234 Uploaded bgruening parents: diff changeset	124
7 d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	125 Find Pattern: ^(.{4})
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	126 Replace Pattern: &\\t
3 7068d1548234 Uploaded bgruening parents: diff changeset	127
7068d1548234 Uploaded bgruening parents: diff changeset	128 Find the first four characters in each line, and replace them with the same text, followed by a tab character. In practice - this will split the first line into two columns.
7068d1548234 Uploaded bgruening parents: diff changeset	129
7068d1548234 Uploaded bgruening parents: diff changeset	130
7068d1548234 Uploaded bgruening parents: diff changeset	131 -----
7068d1548234 Uploaded bgruening parents: diff changeset	132
19 bed2226b90f7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 29899be24c03f631ef3be107fd60e9f898806321 bgruening parents: 18 diff changeset	133 Extended Regular Expression Syntax
3 7068d1548234 Uploaded bgruening parents: diff changeset	134
7 d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	135 The select tool searches the data for lines containing or not containing a match to the given pattern. A Regular Expression is a pattern descibing a certain amount of text.
3 7068d1548234 Uploaded bgruening parents: diff changeset	136
7068d1548234 Uploaded bgruening parents: diff changeset	137 - *( ) { } [ ] . ? + \ ^ $ are all special characters. \\** can be used to "escape" a special character, allowing that special character to be searched for.
7068d1548234 Uploaded bgruening parents: diff changeset	138 - ^ matches the beginning of a string(but not an internal line).
7068d1548234 Uploaded bgruening parents: diff changeset	139 - ( .. ) groups a particular pattern.
7068d1548234 Uploaded bgruening parents: diff changeset	140 - { n or n, or n,m } specifies an expected number of repetitions of the preceding pattern.
7068d1548234 Uploaded bgruening parents: diff changeset	141
7068d1548234 Uploaded bgruening parents: diff changeset	142 - {n} The preceding item is matched exactly n times.
7 d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	143 - {n,} The preceding item ismatched n or more times.
d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	144 - {n,m} The preceding item is matched at least n times but not more than m times.
3 7068d1548234 Uploaded bgruening parents: diff changeset	145
7068d1548234 Uploaded bgruening parents: diff changeset	146 - [ ... ] creates a character class. Within the brackets, single characters can be placed. A dash (-) may be used to indicate a range such as a-z.
7068d1548234 Uploaded bgruening parents: diff changeset	147 - . Matches any single character except a newline.
7068d1548234 Uploaded bgruening parents: diff changeset	148 - ***** The preceding item will be matched zero or more times.
7068d1548234 Uploaded bgruening parents: diff changeset	149 - ? The preceding item is optional and matched at most once.
7068d1548234 Uploaded bgruening parents: diff changeset	150 - + The preceding item will be matched one or more times.
7068d1548234 Uploaded bgruening parents: diff changeset	151 - ^ has two meaning:
7 d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	152 - matches the beginning of a line or string.
3 7068d1548234 Uploaded bgruening parents: diff changeset	153 - indicates negation in a character class. For example, [^...] matches every character except the ones inside brackets.
7068d1548234 Uploaded bgruening parents: diff changeset	154 - $ matches the end of a line or string.
7 d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	155 - \\| Separates alternate possibilities.
3 7068d1548234 Uploaded bgruening parents: diff changeset	156
7068d1548234 Uploaded bgruening parents: diff changeset	157
7068d1548234 Uploaded bgruening parents: diff changeset	158 Note: SED uses extended regular expression syntax, not Perl syntax. \\d, \\w, \\s etc. are not supported.
7068d1548234 Uploaded bgruening parents: diff changeset	159
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	160 ]]>
3 7068d1548234 Uploaded bgruening parents: diff changeset	161 </help>
14 7725ab6dab67 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n' bgruening parents: 13 diff changeset	162 <expand macro="citations" />
3 7068d1548234 Uploaded bgruening parents: diff changeset	163 </tool>

Mercurial > repos > bgruening > text_processing

annotate replace_text_in_line.xml @ 26:f22a309187a3 draft