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<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7">
        <repository changeset_revision="16add262be4e" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="pysam" version="0.7.7">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                   <repository changeset_revision="16add262be4e" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7" />
                   </repository>
                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
                    <package>https://pypi.python.org/packages/source/d/deepTools/deepTools-1.5.8.tar.gz</package>
                    <package>kMer-0.2.0.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz</package>
                    <!--package>https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5=b60639a8b2939836f66495b9a88df757</package-->

                </action>

                <action type="set_environment">
                    <environment_variable action="set_to" name="TEST_ENV_VAR">$INSTALL_DIR</environment_variable>
                </action>

            </actions>
        </install>
        <readme>
            Test repository for easy installation of R packages.
        </readme>
    </package>
</tool_dependency>