Mercurial > repos > bgruening > precommit_test
comparison tool_dependencies.xml @ 7:7dc2e62bb8b4
blat
| author | Bjoern Gruening <bjoern.gruening@gmail.com> |
|---|---|
| date | Thu, 30 May 2013 11:54:27 +0200 |
| parents | 1d21a699af8f |
| children | fbc64ecd5295 |
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| 6:1d21a699af8f | 7:7dc2e62bb8b4 |
|---|---|
| 1 <?xml version='1.0' encoding='utf-8'?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="rdkit" version="2012_12_1"> | 3 <package name="blat" version="1.0.0"> |
| 4 <repository changeset_revision="884c95a27e40" name="package_rdkit_2012_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 4 <install version="1.0"> |
| 5 </package> | 5 <actions> |
| 6 <package name="numpy" version="1.7.1"> | 6 <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action> |
| 7 <repository changeset_revision="1aa6410e151b" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 7 <action type="move_file"> |
| 8 </package> | 8 <source>blat</source> |
| 9 | 9 <destination>$INSTALL_DIR/bin</destination> |
| 10 <package name="matplotlib" version="1.2.1"> | 10 </action> |
| 11 <repository changeset_revision="476a503cfcb3" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 11 <action type="set_environment"> |
| 12 </package> | 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 13 <package name="chemfp" version="1.1p1"> | 13 </action> |
| 14 <repository changeset_revision="00e31088ff16" name="package_chemfp_1_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 14 </actions> |
| 15 </package> | 15 </install> |
| 16 <package name="scipy" version="0.12.0"> | 16 <readme> |
| 17 <repository changeset_revision="2f333d603c2b" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 17 The BLAT binary for linux x86_64 is retrieved from UCSC. |
| 18 </package> | 18 </readme> |
| 19 <package name="bla" version="1.3.18"> | 19 </package> |
| 20 <repository changeset_revision="972aa4e2c80c" name="upload_testing" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | |
| 21 </package> | |
| 22 </tool_dependency> | 20 </tool_dependency> |