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ChemicalToolBoX update.
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Mon, 27 May 2013 16:52:44 +0200
parents ccda1b8ebc72
children
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3a993ff17df5 ChemicalToolBoX update.
Bjoern Gruening <bjoern.gruening@gmail.com>
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <tool_dependency>
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3 <package name="eigen3" version="3.1.3">
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4 <repository changeset_revision="b72b882b30b4" name="package_eigen_3_1" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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5 </package>
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6 <package name="openbabel" version="2.3.2">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action>
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11 <!-- populate the environment variables from the dependend repos -->
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12 <action type="set_environment_for_install">
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3a993ff17df5 ChemicalToolBoX update.
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parents: 6
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13 <repository changeset_revision="b72b882b30b4" name="package_eigen_3_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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14 <package name="eigen3" version="3.1.3" />
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15 </repository>
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16 </action>
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17
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18 <!--
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19 Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version.
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20 -->
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21 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action>
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22 <action type="shell_command">make</action>
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23 <action type="shell_command">make install</action>
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24 <action type="set_environment">
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25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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26 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
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27 <!-- internal variables for open babel -->
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28 <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable>
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29 <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.3.2</environment_variable>
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30 <!-- galaxy variables for other tool wrappers -->
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31 <environment_variable action="set_to" name="OPENBABEL_LIB_DIR">$INSTALL_DIR/lib</environment_variable>
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32 <environment_variable action="set_to" name="OPENBABEL_INCLUDE_DIR">$INSTALL_DIR/include</environment_variable>
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33 </action>
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34 </actions>
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35 </install>
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36 <readme>Compiling OpenBabel requires g++ and CMake 2.4+. Optional but required for a few features are the cairo development libraries. OPENBABEL_INCLUDE_DIR and OPENBABEL_LIB_DIR can be accessed from other tool wrappers.</readme>
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37 </package>
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3a993ff17df5 ChemicalToolBoX update.
Bjoern Gruening <bjoern.gruening@gmail.com>
parents: 6
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38 </tool_dependency>