Mercurial > repos > bgruening > package_openbabel_2_3

changeset 6:ccda1b8ebc72

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Uploaded
author bgruening
date Thu, 23 May 2013 17:26:10 -0400
parents efffcee80e03
children 3a993ff17df5
files tool_dependencies.xml
diffstat 1 files changed, 9 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed May 15 15:16:57 2013 -0400
+++ b/tool_dependencies.xml	Thu May 23 17:26:10 2013 -0400
@@ -1,6 +1,7 @@
+<?xml version="1.0"?>
 <tool_dependency>
     <package name="eigen3" version="3.1.3">
-        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_3_1" owner="bgruening" changeset_revision="b72b882b30b4" prior_installation_required="True" />
+        <repository changeset_revision="b72b882b30b4" name="package_eigen_3_1" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="openbabel" version="2.3.2">
         <install version="1.0">
@@ -9,7 +10,7 @@
 
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
-                    <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_3_1" owner="bgruening" changeset_revision="b72b882b30b4">
+                    <repository changeset_revision="b72b882b30b4" name="package_eigen_3_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="eigen3" version="3.1.3" />
                     </repository>
                 </action>
@@ -21,14 +22,14 @@
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
                     <!-- internal variables for open babel -->
-                    <environment_variable name="BABEL_DATADIR" action="set_to">$INSTALL_DIR/share/openbabel</environment_variable>
-                    <environment_variable name="BABEL_LIBDIR" action="set_to">$INSTALL_DIR/lib/openbabel/2.3.2</environment_variable>
+                    <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable>
+                    <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.3.2</environment_variable>
                     <!-- galaxy variables for other tool wrappers -->
-                    <environment_variable name="OPENBABEL_LIB_DIR" action="set_to">$INSTALL_DIR/lib</environment_variable>
-                    <environment_variable name="OPENBABEL_INCLUDE_DIR" action="set_to">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="set_to" name="OPENBABEL_LIB_DIR">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="set_to" name="OPENBABEL_INCLUDE_DIR">$INSTALL_DIR/include</environment_variable>
                 </action>
             </actions>
         </install>