diff MapStatistics.xml @ 0:3d84209d3178 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MapStatistics.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,44 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="MapStatistics" name="MapStatistics" version="1.12.0">
+  <description>Extract extended statistics on the features of a map for quality control.</description>
+  <macros>
+    <token name="@EXECUTABLE@">MapStatistics</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>MapStatistics
+
+-in ${param_in}
+-in_type ${param_in_type}
+-out ${param_out}
+-n ${param_n}
+${param_m}
+${param_p}
+${param_s}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="featureXML,consensusXML" optional="False" label="Input file" help="(-in)"/>
+    <param name="param_in_type" type="select" optional="True" label="Input file type -- default: determined from file extension or content" help="(-in_type)">
+      <option value="featureXML">featureXML</option>
+      <option value="consensusXML">consensusXML</option>
+    </param>
+    <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map." help="(-n)"/>
+    <param name="param_m" type="boolean" truevalue="-m true" falsevalue="-m false" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m)"/>
+    <param name="param_p" type="boolean" truevalue="-p true" falsevalue="-p false" checked="false" optional="True" label="Shows data processing information" help="(-p)"/>
+    <param name="param_s" type="boolean" truevalue="-s true" falsevalue="-s false" checked="false" optional="True" label="Computes a summary statistics of intensities, qualities, and widths" help="(-s)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Optional output txt file. If '-' or left out, the output is written to the command line." format="txt"/>
+  </outputs>
+  <help>**What it does**
+
+Extract extended statistics on the features of a map for quality control.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html
+
+@REFERENCES@
+</help>
+</tool>