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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="MapStatistics" name="MapStatistics" version="1.12.0">
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3 <description>Extract extended statistics on the features of a map for quality control.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">MapStatistics</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>MapStatistics
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11
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12 -in ${param_in}
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13 -in_type ${param_in_type}
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14 -out ${param_out}
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15 -n ${param_n}
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16 ${param_m}
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17 ${param_p}
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18 ${param_s}
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19 -threads \${GALAXY_SLOTS:-24}
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20 </command>
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21 <inputs>
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22 <param name="param_in" type="data" format="featureXML,consensusXML" optional="False" label="Input file" help="(-in)"/>
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23 <param name="param_in_type" type="select" optional="True" label="Input file type -- default: determined from file extension or content" help="(-in_type)">
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24 <option value="featureXML">featureXML</option>
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25 <option value="consensusXML">consensusXML</option>
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26 </param>
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27 <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map." help="(-n)"/>
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28 <param name="param_m" type="boolean" truevalue="-m true" falsevalue="-m false" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m)"/>
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29 <param name="param_p" type="boolean" truevalue="-p true" falsevalue="-p false" checked="false" optional="True" label="Shows data processing information" help="(-p)"/>
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30 <param name="param_s" type="boolean" truevalue="-s true" falsevalue="-s false" checked="false" optional="True" label="Computes a summary statistics of intensities, qualities, and widths" help="(-s)"/>
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31 </inputs>
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32 <outputs>
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33 <data name="param_out" label="Optional output txt file. If '-' or left out, the output is written to the command line." format="txt"/>
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34 </outputs>
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35 <help>**What it does**
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36
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37 Extract extended statistics on the features of a map for quality control.
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38
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39
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40 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html
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41
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42 @REFERENCES@
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43 </help>
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44 </tool>
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