comparison MapStatistics.xml @ 0:3d84209d3178 draft

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0:3d84209d3178

<?xml version='1.0' encoding='UTF-8'?>
<tool id="MapStatistics" name="MapStatistics" version="1.12.0">
  <description>Extract extended statistics on the features of a map for quality control.</description>
  <macros>
    <token name="@EXECUTABLE@">MapStatistics</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>MapStatistics

-in ${param_in}
-in_type ${param_in_type}
-out ${param_out}
-n ${param_n}
${param_m}
${param_p}
${param_s}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="featureXML,consensusXML" optional="False" label="Input file" help="(-in)"/>
    <param name="param_in_type" type="select" optional="True" label="Input file type -- default: determined from file extension or content" help="(-in_type)">
      <option value="featureXML">featureXML</option>
      <option value="consensusXML">consensusXML</option>
    </param>
    <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map." help="(-n)"/>
    <param name="param_m" type="boolean" truevalue="-m true" falsevalue="-m false" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m)"/>
    <param name="param_p" type="boolean" truevalue="-p true" falsevalue="-p false" checked="false" optional="True" label="Shows data processing information" help="(-p)"/>
    <param name="param_s" type="boolean" truevalue="-s true" falsevalue="-s false" checked="false" optional="True" label="Computes a summary statistics of intensities, qualities, and widths" help="(-s)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="Optional output txt file. If '-' or left out, the output is written to the command line." format="txt"/>
  </outputs>
  <help>**What it does**

Extract extended statistics on the features of a map for quality control.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html

@REFERENCES@
</help>
</tool>