Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts
changeset 10:b6fbf07de5af draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dddc0b9035b8edadfd45d74b01aeca245c2725d7
| author | iuc |
|---|---|
| date | Fri, 27 Apr 2018 08:29:56 -0400 (2018-04-27) |
| parents | 60a37b910467 |
| children | 4a3ccb7d4fc9 |
| files | hicPlotDistVsCounts.xml static/images/hicCompareMatrices_QC_log2_m50_matrix_plot (1).png static/images/hicCompareMatrices_QC_log2_m50_matrix_plot.png static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot (1).png static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot.png static/images/hicPlotDistVsCounts.png static/images/hicPlotDistvsCounts.png |
| diffstat | 7 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/hicPlotDistVsCounts.xml Fri Apr 27 05:50:55 2018 -0400 +++ b/hicPlotDistVsCounts.xml Fri Apr 27 08:29:56 2018 -0400 @@ -102,14 +102,15 @@ Below can be found an example output: .. image:: $PATH_TO_IMAGES/hicPlotDistVsCounts.png - :width: 65% + :scale: 50 % Here, we see that the samples from the first condition are not so well correlated, but they follow the same tendancies and are distinct from the two samples of the second condition. The later are well correlated and display enriched long-range contacts compared to the first condition samples. + On the second graph below, the distance vs. Hi-C contact counts is computed and plotted per chromosome: .. image:: $PATH_TO_IMAGES/hicPlotDistVsCounts_result2.png - :width: 80% + :scale: 50 % _________________