Mercurial > repos > bgruening > glimmer
changeset 2:2d0c26885604
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 07 Jun 2013 07:51:49 -0400 |
| parents | a6582d591d64 |
| children | ce7228503d49 8ddf54417ade |
| files | glimmer3-main-wrapper.xml glimmer_predict.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/glimmer3-main-wrapper.xml Fri Jun 07 07:45:02 2013 -0400 +++ b/glimmer3-main-wrapper.xml Fri Jun 07 07:51:49 2013 -0400 @@ -14,7 +14,7 @@ --max_olap $max_olap --gene_len $gene_len --threshold $threshold - #if float( $gc_percent ) > 0.0: + #if float( str($gc_percent) ) > 0.0: --gc_percent $gc_percent #end if
--- a/glimmer_predict.xml Fri Jun 07 07:45:02 2013 -0400 +++ b/glimmer_predict.xml Fri Jun 07 07:51:49 2013 -0400 @@ -25,7 +25,9 @@ <param name="gene_length" type="integer" value="110" label="Set minimum gene length." /> <param name="threshold" type="integer" value="30" label="Set threshold score for calling as gene. If the in-frame score >= N, then the region is given a number and considered a potential gene." /> <param name="linear" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Assume linear rather than circular genome, i.e., no wraparound" /> - <param name="detailed_report" type="boolean" truevalue="" falsevalue="" checked="false" label="Output a detailed gene prediction report as separate file"/> + + <param name="detailed_report" type="boolean" truevalue="" falsevalue="" checked="false" label="Output a detailed gene prediction report as separate file" /> + <param name="report" type="boolean" truevalue="" falsevalue="" checked="false" label="Report the classic glimmer table output" /> </inputs> <outputs> <data name="genes_output" format="fasta" label="Glimmer3 on ${on_string} (Gene Prediction FASTA)" />