Mercurial > repos > bgruening > erga_ear
annotate test-data/short_summary.specific.mammalia_odb10.pre.asm2.txt @ 0:6af76d4371f8 draft
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
author | bgruening |
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date | Thu, 04 Jul 2024 12:43:34 +0000 |
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6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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1 # BUSCO version is: 5.4.7 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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2 # The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226) |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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3 # Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm2.fasta |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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4 # BUSCO was run in mode: euk_genome_met |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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5 # Gene predictor used: metaeuk |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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6 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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7 ***** Results: ***** |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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8 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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9 C:93.7%[S:92.9%,D:0.8%],F:1.1%,M:5.2%,n:9226 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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10 8641 Complete BUSCOs (C) |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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11 8570 Complete and single-copy BUSCOs (S) |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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12 71 Complete and duplicated BUSCOs (D) |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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13 105 Fragmented BUSCOs (F) |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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14 480 Missing BUSCOs (M) |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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15 9226 Total BUSCO groups searched |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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16 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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17 Assembly Statistics: |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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18 555 Number of scaffolds |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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19 632 Number of contigs |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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20 3238925270 Total length |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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21 0.108% Percent gaps |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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22 116 MB Scaffold N50 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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23 88 MB Contigs N50 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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24 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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25 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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26 Dependencies and versions: |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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27 hmmsearch: 3.1 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
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28 bbtools: 39.01 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
parents:
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29 metaeuk: 6.a5d39d9 |
6af76d4371f8
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
bgruening
parents:
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30 busco: 5.4.7 |