Mercurial > repos > bgruening > erga_ear
diff test-data/short_summary.specific.mammalia_odb10.pre.asm2.txt @ 0:6af76d4371f8 draft
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
| author | bgruening |
|---|---|
| date | Thu, 04 Jul 2024 12:43:34 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/short_summary.specific.mammalia_odb10.pre.asm2.txt Thu Jul 04 12:43:34 2024 +0000 @@ -0,0 +1,30 @@ +# BUSCO version is: 5.4.7 +# The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226) +# Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm2.fasta +# BUSCO was run in mode: euk_genome_met +# Gene predictor used: metaeuk + + ***** Results: ***** + + C:93.7%[S:92.9%,D:0.8%],F:1.1%,M:5.2%,n:9226 + 8641 Complete BUSCOs (C) + 8570 Complete and single-copy BUSCOs (S) + 71 Complete and duplicated BUSCOs (D) + 105 Fragmented BUSCOs (F) + 480 Missing BUSCOs (M) + 9226 Total BUSCO groups searched + +Assembly Statistics: + 555 Number of scaffolds + 632 Number of contigs + 3238925270 Total length + 0.108% Percent gaps + 116 MB Scaffold N50 + 88 MB Contigs N50 + + +Dependencies and versions: + hmmsearch: 3.1 + bbtools: 39.01 + metaeuk: 6.a5d39d9 + busco: 5.4.7