Mercurial > repos > bgruening > diamond
changeset 7:89f59d6c3344 draft
Uploaded
| author | bgruening |
|---|---|
| date | Sun, 08 Feb 2015 07:29:52 -0500 |
| parents | 9a5e0e2c0713 |
| children | c496311bec0c |
| files | tool-data/diamond_database.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 18 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/diamond_database.loc.sample Sun Feb 08 07:29:52 2015 -0500 @@ -0,0 +1,10 @@ +#This is a sample file that enables the diamind to find the protein databases +#You will need to create these data files and then create +#a diamond_database.loc file similar to this one (store it in this directory) +#that points to the directories in which those files are stored. +#The diamond_database_indices.loc file has this format (longer white space characters are TAB characters): +# +#<unique_build_id> <display_name> <file_base_path> +# +#So, for example: +#ncbi_nr NCBI NR database (1-1-2015) /data/db/diamond/1-1-2015/nr.dmnd
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Sun Feb 08 07:29:52 2015 -0500 @@ -0,0 +1,8 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <!-- Locations of indexes in the Bowtie mapper format --> + <table name="diamond_database" comment_char="#"> + <columns>value, name, db_path</columns> + <file path="tool-data/diamond_database.loc" /> + </table> +</tables>