Mercurial > repos > bgruening > deseq2

changeset 0:b02d2083dd89 draft

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Uploaded
author bgruening
date Sun, 30 Jun 2013 17:21:34 -0400 (2013-06-30)
parents
children c0dfa0f736aa
files deseq2.py deseq2.xml
diffstat 2 files changed, 31 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deseq2.py	Sun Jun 30 17:21:34 2013 -0400
@@ -0,0 +1,8 @@
+#!/usr/bin/env python
+import os, sys
+import rpy2.robjects as robjects
+from rpy2.robjects.packages import importr
+deseq2 = importr("DESeq2")
+
+sys.stdout.write('Works!')
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deseq2.xml	Sun Jun 30 17:21:34 2013 -0400
@@ -0,0 +1,23 @@
+<tool id="deseq2" name="DESeq2" version="0.1">
+
+    <description>deseq</description>
+
+    <command interpreter="python">
+    deseq2.py > $outfile
+    </command>
+    <inputs>
+    </inputs>
+
+    <outputs>
+        <data format="txt" name="outfile" label="${tool.name} on ${on_string}: out"/>
+    </outputs>
+
+    <tests>
+    </tests>
+
+    <help>
+
+
+
+  </help>
+</tool>