Mercurial > repos > bgruening > deeptools_multi_bigwig_summary
changeset 25:3aea7e214e4d draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 72ae8f62333aa38d1c63034ddb37184a0f72c64e-dirty
| author | bgruening |
|---|---|
| date | Fri, 02 Mar 2018 15:38:01 -0500 |
| parents | ff2568777abe |
| children | fd51fb3332b7 |
| files | deepTools_macros.xml multiBigwigSummary.xml |
| diffstat | 2 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/deepTools_macros.xml Thu Feb 15 04:13:05 2018 -0500 +++ b/deepTools_macros.xml Fri Mar 02 15:38:01 2018 -0500 @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.0.0</token> + <token name="@WRAPPER_VERSION@">3.0.1</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.0.0">deeptools</requirement> + <requirement type="package" version="3.0.1">deeptools</requirement> <requirement type="package" version="1.7">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -456,7 +456,6 @@ #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier)) ln -s "${f.bamfiles}" "./${counter}.bam" && - ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" && #if $f.bamfiles.ext == 'bam': ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' && #else:
--- a/multiBigwigSummary.xml Thu Feb 15 04:13:05 2018 -0500 +++ b/multiBigwigSummary.xml Fri Mar 02 15:38:01 2018 -0500 @@ -19,8 +19,8 @@ --outFileName $outFile - --bwfiles '#echo "' '".join($files)#' - --labels #echo " ".join($labels)# + --bwfiles #echo ' '.join($files)# + --labels #echo ' '.join($labels)# #if $outRawCounts: --outRawCounts '$outFileRawCounts'