# HG changeset patch
# User bgruening
# Date 1520023081 18000
# Node ID 3aea7e214e4de9dd6d051a285222093496b9b944
# Parent  ff2568777abe7f67746fb345af20b11a73834e1a
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 72ae8f62333aa38d1c63034ddb37184a0f72c64e-dirty

diff -r ff2568777abe -r 3aea7e214e4d deepTools_macros.xml
--- a/deepTools_macros.xml	Thu Feb 15 04:13:05 2018 -0500
+++ b/deepTools_macros.xml	Fri Mar 02 15:38:01 2018 -0500
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.0.1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.0.0">deeptools</requirement>
+            <requirement type="package" version="3.0.1">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -456,7 +456,6 @@
             #for $counter, $f in enumerate($multibam_conditional.multibam_repeats):
                 #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier))
                 ln -s "${f.bamfiles}" "./${counter}.bam" &&
-                ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" &&
                 #if $f.bamfiles.ext == 'bam':
                     ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' &&
                 #else:
diff -r ff2568777abe -r 3aea7e214e4d multiBigwigSummary.xml
--- a/multiBigwigSummary.xml	Thu Feb 15 04:13:05 2018 -0500
+++ b/multiBigwigSummary.xml	Fri Mar 02 15:38:01 2018 -0500
@@ -19,8 +19,8 @@
 
             --outFileName $outFile
 
-            --bwfiles '#echo "' '".join($files)#'
-            --labels #echo " ".join($labels)#
+            --bwfiles #echo ' '.join($files)#
+            --labels #echo ' '.join($labels)#
 
             #if $outRawCounts:
                 --outRawCounts '$outFileRawCounts'