Mercurial > repos > bgruening > data_manager_diamond_database_builder

changeset 1:d2e167e8156d draft

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Uploaded
author bgruening
date Sat, 07 Feb 2015 22:15:41 -0500
parents 5a613b179173
children b9e8963a5eee
files data_manager/data_manager_diamond_database_builder.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_diamond_database_builder.xml	Sat Feb 07 22:08:14 2015 -0500
+++ b/data_manager/data_manager_diamond_database_builder.xml	Sat Feb 07 22:15:41 2015 -0500
@@ -3,7 +3,9 @@
     <requirements>
         <requirement type="package" version="0.6.13">diamond</requirement>
     </requirements>
-    <command interpreter="python">data_manager_sam_fasta_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "fasta_indexes"</command>
+    <command interpreter="python">
+        data_manager_diamond_database_builder.py "${out_file}"
+    </command>
     <inputs>
         <param type="text" name="database" value="" label="Name of database" help="e.g. nr"/>
         <param type="text" name="database_desc" value="" label="Description of database" />