Mercurial > repos > bgruening > data_manager_diamond_database_builder

changeset 2:b9e8963a5eee draft

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Uploaded
author bgruening
date Sat, 07 Feb 2015 22:21:26 -0500
parents d2e167e8156d
children 574c3895b0ca
files data_manager/data_manager_diamond_database_builder.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_diamond_database_builder.py	Sat Feb 07 22:15:41 2015 -0500
+++ b/data_manager/data_manager_diamond_database_builder.py	Sat Feb 07 22:21:26 2015 -0500
@@ -26,7 +26,7 @@
     sys.exit(1)
 
 
-def get_id_name( params, dbkey, fasta_description=None):
+def get_id_name( params ):
     #TODO: ensure sequence_id is unique and does not already appear in location file
     sequence_id = params['param_dict']['sequence_id']
     if not sequence_id:
@@ -219,7 +219,7 @@
     os.mkdir( target_directory )
     data_manager_dict = {}
 
-    sequence_id, sequence_name = get_id_name( params, fasta_description=options.fasta_description )
+    sequence_id, sequence_name = get_id_name( params )
 
     #Fetch the FASTA
     REFERENCE_SOURCE_TO_DOWNLOAD[ params['param_dict']['reference_source']['reference_source_selector'] ]( data_manager_dict, params, target_directory, sequence_id, sequence_name )