Mercurial > repos > bgruening > data_manager_diamond_database_builder

changeset 8:571090e22eb5 draft

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Uploaded
author bgruening
date Sun, 08 Feb 2015 03:55:09 -0500
parents 52bf3ce034ef
children a54ec247ad52
files data_manager/data_manager_diamond_database_builder.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_diamond_database_builder.py	Sun Feb 08 03:42:18 2015 -0500
+++ b/data_manager/data_manager_diamond_database_builder.py	Sun Feb 08 03:55:09 2015 -0500
@@ -58,7 +58,7 @@
 def download_from_ncbi( data_manager_dict, params, target_directory, database_id, database_name ):
     NCBI_FTP_SERVER = 'ftp.ncbi.nlm.nih.gov'
     NCBI_DOWNLOAD_PATH = '/blast/db/FASTA/'
-    COMPRESSED_EXTENSIONS = [ ( '.tar.gz', _get_stream_readers_for_tar ), ( '.tar.bz2', _get_stream_readers_for_tar ), ( '.zip', _get_stream_readers_for_zip ), ( '.fa.gz', _get_stream_readers_for_gzip ), ( '.fa.bz2', _get_stream_readers_for_bz2 ) ]
+    COMPRESSED_EXTENSIONS = [ ( '.tar.gz', _get_stream_readers_for_tar ), ( '.tar.bz2', _get_stream_readers_for_tar ), ( '.zip', _get_stream_readers_for_zip ), ( '.gz', _get_stream_readers_for_gzip ), ( '.bz2', _get_stream_readers_for_bz2 ) ]
 
     ncbi_identifier = params['param_dict']['reference_source']['requested_identifier']
     ftp = FTP( NCBI_FTP_SERVER )