# HG changeset patch # User bgruening # Date 1423385709 18000 # Node ID 571090e22eb53e708ef9b6d016e2e33f169ff2c0 # Parent 52bf3ce034efe00e73bc6002b1240ab46ee032eb Uploaded diff -r 52bf3ce034ef -r 571090e22eb5 data_manager/data_manager_diamond_database_builder.py --- a/data_manager/data_manager_diamond_database_builder.py Sun Feb 08 03:42:18 2015 -0500 +++ b/data_manager/data_manager_diamond_database_builder.py Sun Feb 08 03:55:09 2015 -0500 @@ -58,7 +58,7 @@ def download_from_ncbi( data_manager_dict, params, target_directory, database_id, database_name ): NCBI_FTP_SERVER = 'ftp.ncbi.nlm.nih.gov' NCBI_DOWNLOAD_PATH = '/blast/db/FASTA/' - COMPRESSED_EXTENSIONS = [ ( '.tar.gz', _get_stream_readers_for_tar ), ( '.tar.bz2', _get_stream_readers_for_tar ), ( '.zip', _get_stream_readers_for_zip ), ( '.fa.gz', _get_stream_readers_for_gzip ), ( '.fa.bz2', _get_stream_readers_for_bz2 ) ] + COMPRESSED_EXTENSIONS = [ ( '.tar.gz', _get_stream_readers_for_tar ), ( '.tar.bz2', _get_stream_readers_for_tar ), ( '.zip', _get_stream_readers_for_zip ), ( '.gz', _get_stream_readers_for_gzip ), ( '.bz2', _get_stream_readers_for_bz2 ) ] ncbi_identifier = params['param_dict']['reference_source']['requested_identifier'] ftp = FTP( NCBI_FTP_SERVER )