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annotate macros.xml @ 3:f6cc3378ec15 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit d4e8bcb01de330e345970d3df6b75392c7fe2275
author bgruening
date Fri, 26 Jul 2024 16:15:23 +0000
parents a4e7a0877d0c
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1 <macros>
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2 <token name="@TOOL_VERSION@">4.0.7</token>
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3 <token name="@VERSION_SUFFIX@">2</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <container type="docker">quay.io/biocontainers/blobtoolkit:4.3.11</container>
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8 </requirements>
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9 </xml>
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10 <xml name="citations">
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11 <citations>
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12 <citation type="doi">10.1534/g3.119.400908</citation>
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13 </citations>
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14 </xml>
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15 <xml name="macro_text_input" >
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16 <conditional name="text_input">
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17 <param name="selector" type="select" label="Genetic text file" help="Include a genetic text file as input">
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18 <option value="enabled">Enabled</option>
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19 <option value="disabled" selected="true">Disabled</option>
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20 </param>
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21 <when value="enabled">
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22 <param argument="--text" type="data" format="txt" label="Generic text file"/>
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23 <param argument="--text-cols" type="text" value="" label="Column specification" help="Example: 1=identifiers,2,3=score,total=total_score">
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24 <sanitizer invalid_char="">
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25 <valid initial="string.letters,string.digits">
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26 <add value="_" />
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27 <add value="," />
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28 <add value="=" />
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29 <add value="-" />
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30 <add value="#" />
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31 </valid>
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32 </sanitizer>
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33 <validator type="regex">[0-9a-zA-Z=,_#-]+</validator>
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34 </param>
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35 <param argument="--text-header" type="boolean" truevalue="--text-header" falsevalue="" checked="false" label="Text has header row" help="Set the flag if a text file contains a header row" />
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36 <param argument="--text-delimiter" type="select" label="Text delimiter" help="Character used as delimiter in the text file">
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37 <option value=",">Comma</option>
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38 <option value="\t">Tabulation</option>
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39 <option value="whitespace">Whitespace</option>
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40 </param>
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41 <yield/>
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42 </when>
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43 <when value="disabled"/>
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44 </conditional>
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45 </xml>
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46 <xml name="macro_taxdump">
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47 <param argument="--taxdump" type="data" format="tar,gz,tgz" label="NCBI taxdump directory" help="It requires to use the last taxdump version. You can find more information about it in the help section."/>
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48 </xml>
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49 <xml name="blobtk_plotting">
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50 <conditional name="blobtk_plot_options">
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51 <param name="blobtk_plot" type="select" label="Do you want to plot the dataset">
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52 <option value="yes">Yes</option>
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53 <option value="no">No</option>
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54 </param>
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55 <when value="yes">
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56 <param name="plot_view" type="select" label="Select the view type for the plot">
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57 <option value="blob" selected="true">Blob view</option>
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58 <option value="cumulative">Cumulative view</option>
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59 <option value="legend">Legend view</option>
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60 <option value="snail">Snail view</option>
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61 </param>
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62 </when>
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63 <when value="no"></when>
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64 </conditional>
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65 </xml>
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66 </macros>