Mercurial > repos > bgruening > blobtoolkit

annotate macros.xml @ 1:cbcbcb47b798 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 797eb67eae4dfe502325c53f78824c5ba4033955
author bgruening
date Mon, 20 Mar 2023 16:37:40 +0000
parents 73417c40e518
children a4e7a0877d0c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
1 <macros>
1
cbcbcb47b798 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 797eb67eae4dfe502325c53f78824c5ba4033955
bgruening
parents: 0
diff changeset
2 <token name="@TOOL_VERSION@">4.0.7</token>
0
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
3 <token name="@VERSION_SUFFIX@">0</token>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
4
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
5 <xml name="requirements">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
6 <requirements>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
7 <container type="docker">genomehubs/blobtoolkit:@TOOL_VERSION@</container>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
8 </requirements>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
9 </xml>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
10 <xml name="citations">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
11 <citations>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
12 <citation type="doi">10.1534/g3.119.400908</citation>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
13 </citations>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
14 </xml>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
15 <xml name="macro_text_input" >
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
16 <conditional name="text_input">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
17 <param name="selector" type="select" label="Genetic text file" help="Include a genetic text file as input">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
18 <option value="enabled">Enabled</option>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
19 <option value="disabled" selected="true">Disabled</option>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
20 </param>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
21 <when value="enabled">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
22 <param argument="--text" type="data" format="txt" label="Generic text file"/>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
23 <param argument="--text-cols" type="text" value="" label="Column specification" help="Example: 1=identifiers,2,3=score,total=total_score">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
24 <sanitizer invalid_char="">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
25 <valid initial="string.letters,string.digits">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
26 <add value="_" />
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
27 <add value="," />
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
28 <add value="=" />
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
29 <add value="-" />
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
30 <add value="#" />
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
31 </valid>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
32 </sanitizer>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
33 <validator type="regex">[0-9a-zA-Z=,_#-]+</validator>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
34 </param>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
35 <param argument="--text-header" type="boolean" truevalue="--text-header" falsevalue="" checked="false" label="Text has header row" help="Set the flag if a text file contains a header row" />
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
36 <param argument="--text-delimiter" type="select" label="Text delimiter" help="Character used as delimiter in the text file">
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
37 <option value=",">Comma</option>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
38 <option value="\t">Tabulation</option>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
39 <option value="whitespace">Whitespace</option>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
40 </param>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
41 <yield/>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
42 </when>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
43 <when value="disabled"/>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
44 </conditional>
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
45
73417c40e518 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9
bgruening
parents:
diff changeset
46 </xml>
1
cbcbcb47b798 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 797eb67eae4dfe502325c53f78824c5ba4033955
bgruening
parents: 0
diff changeset
47 </macros>