Mercurial > repos > bgruening > bismark
changeset 2:5226800b84ca draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 12 Oct 2012 04:17:23 -0400 |
| parents | 39ac0c2600ea |
| children | 678f31a13093 |
| files | bismark_wrapper/bismark_wrapper.xml bismark_wrapper/tool_dependencies.xml |
| diffstat | 2 files changed, 10 insertions(+), 1 deletions(-) [+] |
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--- a/bismark_wrapper/bismark_wrapper.xml Fri Oct 12 04:08:03 2012 -0400 +++ b/bismark_wrapper/bismark_wrapper.xml Fri Oct 12 04:17:23 2012 -0400 @@ -1,6 +1,6 @@ <tool id="bismark" name="Bismark" version="0.7.7.1"> <!-- Wrapper compatible with Bismark version 0.7.7 --> - <description>is a bisulfite mapper</description> + <description>bisulfite mapper</description> <version_command>bismark --version</version_command> <requirements> <requirement type="package">bismark</requirement>
--- a/bismark_wrapper/tool_dependencies.xml Fri Oct 12 04:08:03 2012 -0400 +++ b/bismark_wrapper/tool_dependencies.xml Fri Oct 12 04:17:23 2012 -0400 @@ -23,4 +23,13 @@ Compiling bowtie2 requires zlib and libpthread to be present on your system. </readme> </package> + <!-- We ship bismark with that wrapper, so we only need to set the PATH variable --> + <package name="bismark"> + <install version="1.0"> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">./</environment_variable> + </action> + </actions> + </install> + </package> </tool_dependency>