changeset 6:eac84272bb00 draft

Deleted selected files
author bernhardlutz
date Mon, 23 Dec 2013 16:30:44 -0500
parents ecd787bb0ccf
children 76b5b9e6c5ca
files rnaz.xml tool_dependencies.xml
diffstat 2 files changed, 0 insertions(+), 36 deletions(-) [+]
line wrap: on
line diff
--- a/rnaz.xml	Mon Dec 23 16:28:17 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<tool id="rnaz" name="RNAz" version="0.1.0">
-    <description></description>
-    <requirements>
-        <requirement type="package" version="1.0">rnaz</requirement>
-    </requirements>
-    <command>
-RNAz $inputaln $outfile
-    </command>
-    <stdio>
-        <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
-        <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" />
-    </stdio>
-    <inputs>
-        <param format="aln" name="inputaln" type="data" label="Input Alignment File" />
-    </inputs>
-    <outputs>
-        <data name="outfile" format="txt" />
-    </outputs>
-    <help>**What it does**
-     RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. It can be used in genome wide screens to detect functional RNA structures, as found in noncoding RNAs and cis-acting regulatory elements of mRNAs.
-    </help>
-</tool>
--- a/tool_dependencies.xml	Mon Dec 23 16:28:17 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-<tool_dependency>
-    <package name="rnaz" version="2.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
-                <action type="autoconf" />
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>Compiling RNAz requires a C compiler (typically gcc)</readme>
-    </package>
-</tool_dependency>