# HG changeset patch
# User bernhardlutz
# Date 1387834244 18000
# Node ID eac84272bb00b90e050139e3520774c0730dfe32
# Parent  ecd787bb0ccfeaccb40de20bb15b7ad08c48a00a
Deleted selected files

diff -r ecd787bb0ccf -r eac84272bb00 rnaz.xml
--- a/rnaz.xml	Mon Dec 23 16:28:17 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<tool id="rnaz" name="RNAz" version="0.1.0">
-    <description></description>
-    <requirements>
-        <requirement type="package" version="1.0">rnaz</requirement>
-    </requirements>
-    <command>
-RNAz $inputaln $outfile
-    </command>
-    <stdio>
-        <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
-        <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" />
-    </stdio>
-    <inputs>
-        <param format="aln" name="inputaln" type="data" label="Input Alignment File" />
-    </inputs>
-    <outputs>
-        <data name="outfile" format="txt" />
-    </outputs>
-    <help>**What it does**
-     RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. It can be used in genome wide screens to detect functional RNA structures, as found in noncoding RNAs and cis-acting regulatory elements of mRNAs.
-    </help>
-</tool>
diff -r ecd787bb0ccf -r eac84272bb00 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Dec 23 16:28:17 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-<tool_dependency>
-    <package name="rnaz" version="2.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
-                <action type="autoconf" />
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>Compiling RNAz requires a C compiler (typically gcc)</readme>
-    </package>
-</tool_dependency>