Mercurial > repos > bernhardlutz > rnaz

changeset 9:c614f623f8f5 draft

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Uploaded
author bernhardlutz
date Mon, 23 Dec 2013 17:26:33 -0500
parents 415552882f63
children 87f6ce525479
files rnaz.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaz.xml	Mon Dec 23 17:26:33 2013 -0500
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+<tool id="rnaz" name="RNAz" version="0.1.0">
+    <description></description>
+    <requirements>
+        <requirement type="package" version="2.1">rnaz</requirement>
+    </requirements>
+    <command>
+RNAz $inputaln $outfile
+    </command>
+    <stdio>
+        <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
+        <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" />
+    </stdio>
+    <inputs>
+        <param format="aln" name="inputaln" type="data" label="Input Alignment File" />
+    </inputs>
+    <outputs>
+        <data name="outfile" format="txt" />
+    </outputs>
+    <help>**What it does**
+     RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. It can be used in genome wide screens to detect functional RNA structures, as found in noncoding RNAs and cis-acting regulatory elements of mRNAs.
+    </help>
+</tool>