Mercurial > repos > bernhardlutz > rnaz
comparison test-data/testfile.aln @ 10:87f6ce525479 draft default tip
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| author | bernhardlutz |
|---|---|
| date | Thu, 09 Jan 2014 16:11:17 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 9:c614f623f8f5 | 10:87f6ce525479 |
|---|---|
| 1 CLUSTAL W(1.81) multiple sequence alignment | |
| 2 | |
| 3 hg17 T-GTGCTGAGTTGCCACAAAGTTGTCAAGTTACAATCCTTAG-ACATCACTGTAT---TC | |
| 4 echTel1 T-GTGCTGAGTTGCCAGATAGTTGTCAAGGTACAGGCTGTAT-AGATCACCCTATCCTTC | |
| 5 bosTau2 T-ATGCTGAGTTGCCACAAAGGTGTCATGTTACAATCCATAG-GCATCACTGTGTTGTTT | |
| 6 canFam2 T-ATGCTGAATTGCCATACAGTTGTCAAGTTACAATCCTTAG-ACATCACTGTATTGCTT | |
| 7 oryCun1 C-GTGCTGAGTTGCCATACAGTTGTCAAGTTGCAGTCCTTAG-ACATCACTGTGTTGTTC | |
| 8 mm7 T-ATGCTGAATTG-CAGAACGTTGTCAAGGTATAATTTTTAG-ATATCACTATATGGCTC | |
| 9 rn3 TGATGCTGAGTTG-TACAACGTTGTCAGGTTACAGTTTTTAG-ATATCACTACATAGCTG | |
| 10 rheMac2 T-GTGCTGAGTTGCCACAAACTTGTCAAGTTAAAATCCTCAG-ACATCACTGTAT---TC | |
| 11 panTro1 T-GTGCTGAGTTGCCACAAAGTTGTCAAGTTACAATCCTTAG-ACATCACTGTAT---TC | |
| 12 monDom2 ----------------------TGGCAAGTCACAATCCTAAGTGTACCATTTTATCATTT | |
| 13 | |
| 14 hg17 TTGAGAGGCGTAGACCTGAGATGTGCTTATTTTTAGATTTAAACTTGATCAGCACTTGAT | |
| 15 echTel1 TTGAGAGGAACACACCTTAGAGGAC-GTGTTTAGGACTGTAGG------CAGCACTTGAT | |
| 16 bosTau2 CTGAGAGAAATAGACTCCAAATCTGCTTATTTAAGGATTTAGG------CAGCACTTGAT | |
| 17 canFam2 CTGAGAGGAATAGACATAAGATGTGCTT-TTTAAGGATTTAGG------CAGCACTTGAT | |
| 18 oryCun1 TTGACAGGAGTAGACCTGAGATGTGTATTTTTAAAGATGTAAACTTGGTCAGCACTTGAT | |
| 19 mm7 TTATAAGGAGTGGGCCTGAGGGgtgtGTATTTAAGGATTTAGATTTGACCAGCACTTGAT | |
| 20 rn3 TTA-AAGGAATGGGCCTGAGATGTGT---TTTAAGGATTTAGATGTGACCAGCACTTGAT | |
| 21 rheMac2 TTGAGAGGTGTAGACCTGAGATGTGCTTATTTTTAGATTTAAACTTAATCAGCACTTGAT | |
| 22 panTro1 TTGAGAGGCGTAGACCTGAGGTGTGCTTATTTTTAGATTTAAACTTGATCAGCACTTGAT | |
| 23 monDom2 TTATTAGCAATAAGCCAAGACTGGTC----TTATCTATATGGAATTACCAAGCACTTGAT | |
| 24 | |
| 25 hg17 ACTAACCGAGCTGTCTATATCCTAGCCTTGTGTCAAAGGCTTGTGATGTG--TTGTGATA | |
| 26 echTel1 ACTAACCGAGCTATCTATGTCCTAGCC-TATGTCAAAGGCTTGTGATGTG--TTGTGATC | |
| 27 bosTau2 ACTAACCGAGCTATCTATGTCCAAGCCTTATGTCAGAGGCCTGTGATGTG--TTGTGATA | |
| 28 canFam2 ACTAACCGAGCTATCTATATCCTAGCCTTGTGCCAAAGGCTTGTGATGTG--TTGTGATA | |
| 29 oryCun1 ACTAACCGAGCTATCTGCATCCTGGTCTTGTGTCAAAGGCTTGGGATGTG--TTGTGATA | |
| 30 mm7 ACTAACCGAGCTATCTGTATCCTCGTCTTGT-TTAAAGGCTTGTGATATG--CTGTGGTA | |
| 31 rn3 ACTAACCGAGCTATCTATATCCTCGTCCTGT-CTAAAGGCTTG-GATATG--TTGTGATA | |
| 32 rheMac2 ACTAACCTAGCTATCTATATCCTGGCTTTGTATCAAAGGCTTGTGATGTG--TTGTGATA | |
| 33 panTro1 ACTAACCGAGCTGTCTGTATCCTAGCCTTGTGACAAAGGCTTGTGATGTG--TTGTGATA | |
| 34 monDom2 ACTAACCAAGCTATCTGTATCCTGATGCCGCTCCAGAAG-TTGGGATGTATCTTGTGATA | |
| 35 | |
| 36 hg17 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG | |
| 37 echTel1 GCTGGGTTT-AAGAAGTGCAATATTAAAAC--AAGCCATGAGTCTTTTAAGCCCAGGGTG | |
| 38 bosTau2 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGGGTG | |
| 39 canFam2 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG | |
| 40 oryCun1 GCTGGGTTT-AAGAAGTGCAATATCAAAACAAAAGCCATGAGGCTTTTAAGCCCAGAGTG | |
| 41 mm7 GTTGGGTTG-CAGAAGTGCGATATTAAAGTAAAAGCCATGAGTCTTTTAGGCCCAGTGTG | |
| 42 rn3 GTTGGGTTG-CAGAAGTGCGATATTAAAGTCAAAGCCATGAGTCTTTTAGGCCCAGTGTG | |
| 43 rheMac2 GCTGGGTTT-AAGAAGTGCAACATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG | |
| 44 panTro1 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG | |
| 45 monDom2 GCTGGGTTT-TATAAGTGCAATATTAAAGT--AAACCATGAGTCTTTTAAGCCCAGCATG | |
| 46 | |
| 47 hg17 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGCAGT-------AC | |
| 48 echTel1 TAAAGCC--ACACTCTGAGTTATAACTCAAAGGCACAAC-TGACTAGTGGC-------AC | |
| 49 bosTau2 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAATGGT-------AT | |
| 50 canFam2 TAAAGAC--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGTGGT-------AT | |
| 51 oryCun1 TAAAGAC--ACACTCTGAGTTATAACTCAGAGGCACAGC-TGGATAGTGGGATGCAGATT | |
| 52 mm7 TAAAGAC--ACATTCTGAGTTATAACTCAGAGGCACATT-TGGATAGT----------AT | |
| 53 rn3 TAAAGAC--ACACTCTGAGTTATAACTCAGAGGCACATT-TGGATAGTG---------AT | |
| 54 rheMac2 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGTGGT-------AC | |
| 55 panTro1 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGCGGT-------AC | |
| 56 monDom2 TGGAGTTGAGCATGCTGGGTTATAACTCAAAGGTA------------CAGC-------AT | |
| 57 | |
| 58 hg17 TGGCCATAGCTAGTCAAGAAGCTACGGCTTTAGTGACT-GTTGAAAGCCAGTGCATTATT | |
| 59 echTel1 TGGCCATATCAAGACAAGAAATTAAAGCTTTAGTGGCC-ATTGAAATCCAATGTGTTA-- | |
| 60 bosTau2 TAGCCATAGCTAGTTAAGCAGTTGCGGT-TTAGTGACTACTGAAGGGCCAGTGCATTATT | |
| 61 canFam2 TAGCCATACCTAGTGAAGAAATTGTGGTGTTAGTGACT-TTTAAAGGCCAGTGCATTATT | |
| 62 oryCun1 TAGTGACTGTTGGACTA-ATGCTTTAGTTCCTGCACTT-GG-ACAGAGCAGCACATTC-C | |
| 63 mm7 CAGCAGTAGCCAGCCAC-AGGTCACAGCCTTGGGAACC-AG--AAGAACAAGGCACGA-T | |
| 64 rn3 CAGCCGTGGCTAGCCAA-AAGTCACAGCCTTAGGAACC-AG-AAAGAACAAGGCATGA-T | |
| 65 rheMac2 TGGCCATAGCTAGTCAAGAAGCTATGGCTTTAGTGACT-GTTGAAAGCCAGTGCATTATT | |
| 66 panTro1 TGGCCATAGCTAGTCAAGAAGCTACGGCTTTAGTGACT-GTTGAAAGCCAGTGCATTATT | |
| 67 monDom2 CGATGGTAGCCAGACCAGGAGTAATGACTATAATGAAA-ATCAGAAGCCAGT-------C | |
| 68 | |
| 69 hg17 TCATTCACTTGGA--CAGAAGCAGCACATTGTTCA | |
| 70 echTel1 ---GTCATGTGGA--CAGAAGC---ACATTGTCCA | |
| 71 bosTau2 TCATTCACCTGGA--CAGAAGAAGCAAATTGTCTT | |
| 72 canFam2 TCATTCACTTG--------------ACATTGTTGA | |
| 73 oryCun1 CTAAGCACAT------------------------- | |
| 74 mm7 TCATTCAGTT------------------------- | |
| 75 rn3 TCATTCACTT------------------------- | |
| 76 rheMac2 TCAGTCACTTGGA--CAGAAGCAGCACATTGTTCA | |
| 77 panTro1 TCATTCACTTGGA--CAGAAGCAGCACATTGTTCA | |
| 78 monDom2 TCCTTGATATGAATTCAGATGTGAGATATT-CCCA | |
| 79 | |
| 80 |