annotate test-data/testfile.aln @ 10:87f6ce525479 draft default tip

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author bernhardlutz
date Thu, 09 Jan 2014 16:11:17 -0500
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10
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1 CLUSTAL W(1.81) multiple sequence alignment
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2
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3 hg17 T-GTGCTGAGTTGCCACAAAGTTGTCAAGTTACAATCCTTAG-ACATCACTGTAT---TC
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4 echTel1 T-GTGCTGAGTTGCCAGATAGTTGTCAAGGTACAGGCTGTAT-AGATCACCCTATCCTTC
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5 bosTau2 T-ATGCTGAGTTGCCACAAAGGTGTCATGTTACAATCCATAG-GCATCACTGTGTTGTTT
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6 canFam2 T-ATGCTGAATTGCCATACAGTTGTCAAGTTACAATCCTTAG-ACATCACTGTATTGCTT
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7 oryCun1 C-GTGCTGAGTTGCCATACAGTTGTCAAGTTGCAGTCCTTAG-ACATCACTGTGTTGTTC
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8 mm7 T-ATGCTGAATTG-CAGAACGTTGTCAAGGTATAATTTTTAG-ATATCACTATATGGCTC
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9 rn3 TGATGCTGAGTTG-TACAACGTTGTCAGGTTACAGTTTTTAG-ATATCACTACATAGCTG
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10 rheMac2 T-GTGCTGAGTTGCCACAAACTTGTCAAGTTAAAATCCTCAG-ACATCACTGTAT---TC
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11 panTro1 T-GTGCTGAGTTGCCACAAAGTTGTCAAGTTACAATCCTTAG-ACATCACTGTAT---TC
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12 monDom2 ----------------------TGGCAAGTCACAATCCTAAGTGTACCATTTTATCATTT
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13
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14 hg17 TTGAGAGGCGTAGACCTGAGATGTGCTTATTTTTAGATTTAAACTTGATCAGCACTTGAT
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15 echTel1 TTGAGAGGAACACACCTTAGAGGAC-GTGTTTAGGACTGTAGG------CAGCACTTGAT
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16 bosTau2 CTGAGAGAAATAGACTCCAAATCTGCTTATTTAAGGATTTAGG------CAGCACTTGAT
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17 canFam2 CTGAGAGGAATAGACATAAGATGTGCTT-TTTAAGGATTTAGG------CAGCACTTGAT
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18 oryCun1 TTGACAGGAGTAGACCTGAGATGTGTATTTTTAAAGATGTAAACTTGGTCAGCACTTGAT
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19 mm7 TTATAAGGAGTGGGCCTGAGGGgtgtGTATTTAAGGATTTAGATTTGACCAGCACTTGAT
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20 rn3 TTA-AAGGAATGGGCCTGAGATGTGT---TTTAAGGATTTAGATGTGACCAGCACTTGAT
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21 rheMac2 TTGAGAGGTGTAGACCTGAGATGTGCTTATTTTTAGATTTAAACTTAATCAGCACTTGAT
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22 panTro1 TTGAGAGGCGTAGACCTGAGGTGTGCTTATTTTTAGATTTAAACTTGATCAGCACTTGAT
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23 monDom2 TTATTAGCAATAAGCCAAGACTGGTC----TTATCTATATGGAATTACCAAGCACTTGAT
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24
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25 hg17 ACTAACCGAGCTGTCTATATCCTAGCCTTGTGTCAAAGGCTTGTGATGTG--TTGTGATA
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26 echTel1 ACTAACCGAGCTATCTATGTCCTAGCC-TATGTCAAAGGCTTGTGATGTG--TTGTGATC
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27 bosTau2 ACTAACCGAGCTATCTATGTCCAAGCCTTATGTCAGAGGCCTGTGATGTG--TTGTGATA
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28 canFam2 ACTAACCGAGCTATCTATATCCTAGCCTTGTGCCAAAGGCTTGTGATGTG--TTGTGATA
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29 oryCun1 ACTAACCGAGCTATCTGCATCCTGGTCTTGTGTCAAAGGCTTGGGATGTG--TTGTGATA
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30 mm7 ACTAACCGAGCTATCTGTATCCTCGTCTTGT-TTAAAGGCTTGTGATATG--CTGTGGTA
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31 rn3 ACTAACCGAGCTATCTATATCCTCGTCCTGT-CTAAAGGCTTG-GATATG--TTGTGATA
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32 rheMac2 ACTAACCTAGCTATCTATATCCTGGCTTTGTATCAAAGGCTTGTGATGTG--TTGTGATA
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33 panTro1 ACTAACCGAGCTGTCTGTATCCTAGCCTTGTGACAAAGGCTTGTGATGTG--TTGTGATA
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34 monDom2 ACTAACCAAGCTATCTGTATCCTGATGCCGCTCCAGAAG-TTGGGATGTATCTTGTGATA
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35
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36 hg17 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG
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37 echTel1 GCTGGGTTT-AAGAAGTGCAATATTAAAAC--AAGCCATGAGTCTTTTAAGCCCAGGGTG
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38 bosTau2 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGGGTG
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39 canFam2 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG
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40 oryCun1 GCTGGGTTT-AAGAAGTGCAATATCAAAACAAAAGCCATGAGGCTTTTAAGCCCAGAGTG
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41 mm7 GTTGGGTTG-CAGAAGTGCGATATTAAAGTAAAAGCCATGAGTCTTTTAGGCCCAGTGTG
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42 rn3 GTTGGGTTG-CAGAAGTGCGATATTAAAGTCAAAGCCATGAGTCTTTTAGGCCCAGTGTG
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43 rheMac2 GCTGGGTTT-AAGAAGTGCAACATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG
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44 panTro1 GCTGGGTTT-AAGAAGTGCAATATTAAAACAAAAGCCATGAGTCTTTTAAGCCCAGTGTG
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45 monDom2 GCTGGGTTT-TATAAGTGCAATATTAAAGT--AAACCATGAGTCTTTTAAGCCCAGCATG
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46
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47 hg17 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGCAGT-------AC
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48 echTel1 TAAAGCC--ACACTCTGAGTTATAACTCAAAGGCACAAC-TGACTAGTGGC-------AC
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49 bosTau2 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAATGGT-------AT
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50 canFam2 TAAAGAC--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGTGGT-------AT
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51 oryCun1 TAAAGAC--ACACTCTGAGTTATAACTCAGAGGCACAGC-TGGATAGTGGGATGCAGATT
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52 mm7 TAAAGAC--ACATTCTGAGTTATAACTCAGAGGCACATT-TGGATAGT----------AT
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53 rn3 TAAAGAC--ACACTCTGAGTTATAACTCAGAGGCACATT-TGGATAGTG---------AT
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54 rheMac2 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGTGGT-------AC
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55 panTro1 TAAAGAT--ACACTCTGAGTTATAACTCAGAGGCACAAC-TGGATAGCGGT-------AC
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56 monDom2 TGGAGTTGAGCATGCTGGGTTATAACTCAAAGGTA------------CAGC-------AT
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57
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58 hg17 TGGCCATAGCTAGTCAAGAAGCTACGGCTTTAGTGACT-GTTGAAAGCCAGTGCATTATT
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59 echTel1 TGGCCATATCAAGACAAGAAATTAAAGCTTTAGTGGCC-ATTGAAATCCAATGTGTTA--
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60 bosTau2 TAGCCATAGCTAGTTAAGCAGTTGCGGT-TTAGTGACTACTGAAGGGCCAGTGCATTATT
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61 canFam2 TAGCCATACCTAGTGAAGAAATTGTGGTGTTAGTGACT-TTTAAAGGCCAGTGCATTATT
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62 oryCun1 TAGTGACTGTTGGACTA-ATGCTTTAGTTCCTGCACTT-GG-ACAGAGCAGCACATTC-C
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63 mm7 CAGCAGTAGCCAGCCAC-AGGTCACAGCCTTGGGAACC-AG--AAGAACAAGGCACGA-T
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64 rn3 CAGCCGTGGCTAGCCAA-AAGTCACAGCCTTAGGAACC-AG-AAAGAACAAGGCATGA-T
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65 rheMac2 TGGCCATAGCTAGTCAAGAAGCTATGGCTTTAGTGACT-GTTGAAAGCCAGTGCATTATT
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66 panTro1 TGGCCATAGCTAGTCAAGAAGCTACGGCTTTAGTGACT-GTTGAAAGCCAGTGCATTATT
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67 monDom2 CGATGGTAGCCAGACCAGGAGTAATGACTATAATGAAA-ATCAGAAGCCAGT-------C
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68
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69 hg17 TCATTCACTTGGA--CAGAAGCAGCACATTGTTCA
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70 echTel1 ---GTCATGTGGA--CAGAAGC---ACATTGTCCA
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71 bosTau2 TCATTCACCTGGA--CAGAAGAAGCAAATTGTCTT
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72 canFam2 TCATTCACTTG--------------ACATTGTTGA
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73 oryCun1 CTAAGCACAT-------------------------
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74 mm7 TCATTCAGTT-------------------------
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75 rn3 TCATTCACTT-------------------------
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76 rheMac2 TCAGTCACTTGGA--CAGAAGCAGCACATTGTTCA
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77 panTro1 TCATTCACTTGGA--CAGAAGCAGCACATTGTTCA
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78 monDom2 TCCTTGATATGAATTCAGATGTGAGATATT-CCCA
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79
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80