view tool_dependencies.xml @ 0:73b3e2f98631 draft default tip

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4

<?xml version="1.0"?>
<tool_dependency>
    <package name="ant" version="1.9.6">
        <repository changeset_revision="c49abc8cead0" name="package_ant_1_9_6" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="rdptools" version="2.0.2">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone --recursive https://github.com/rdpstaff/RDPTools.git rdptools</action>
                <action type="change_directory">rdptools</action>
                <action type="shell_command">git checkout 2.0.2</action>
                <action type="shell_command">git submodule update --init</action>
                <action type="shell_command">make</action>
                <action type="change_directory">../</action>
                <action type="make_directory">$INSTALL_DIR/rdptools/</action>
                <action type="move_directory_files">
                    <source_directory>rdptools/</source_directory>
                    <destination_directory>$INSTALL_DIR/rdptools/</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="RDP_TOOLS_DIR">$INSTALL_DIR/rdptools/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/rdptools/</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
RDPTols is an open source command-line tool suite for performing a complete 
workflow of analysis tasks of NGS data.

Clone the github repository and configure the tools.

For more details, see: 
https://github.com/rdpstaff/RDPTools
        </readme>
    </package>
</tool_dependency>