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annotate tool_dependencies.xml @ 0:73b3e2f98631 draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
author bebatut
date Mon, 16 Nov 2015 02:46:50 -0500
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73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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1 <?xml version="1.0"?>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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2 <tool_dependency>
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3 <package name="ant" version="1.9.6">
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4 <repository changeset_revision="c49abc8cead0" name="package_ant_1_9_6" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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5 </package>
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6 <package name="rdptools" version="2.0.2">
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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7 <install version="1.0">
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8 <actions>
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9 <action type="shell_command">git clone --recursive https://github.com/rdpstaff/RDPTools.git rdptools</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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10 <action type="change_directory">rdptools</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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11 <action type="shell_command">git checkout 2.0.2</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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12 <action type="shell_command">git submodule update --init</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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13 <action type="shell_command">make</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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14 <action type="change_directory">../</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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15 <action type="make_directory">$INSTALL_DIR/rdptools/</action>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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16 <action type="move_directory_files">
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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17 <source_directory>rdptools/</source_directory>
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18 <destination_directory>$INSTALL_DIR/rdptools/</destination_directory>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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19 </action>
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20 <action type="set_environment">
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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21 <environment_variable action="set_to" name="RDP_TOOLS_DIR">$INSTALL_DIR/rdptools/</environment_variable>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/rdptools/</environment_variable>
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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23 </action>
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24 </actions>
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25 </install>
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26 <readme>
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27 RDPTols is an open source command-line tool suite for performing a complete
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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28 workflow of analysis tasks of NGS data.
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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29
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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30 Clone the github repository and configure the tools.
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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31
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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32 For more details, see:
73b3e2f98631 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/rdptools commit fa8135b9b1918785c3f3b3fb7325bfe031b44ec4
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33 https://github.com/rdpstaff/RDPTools
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34 </readme>
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35 </package>
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36 </tool_dependency>