Mercurial > repos > bebatut > metaphlan2

changeset 14:54f2ad0c6960 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 8afeda0bbec5217302cc98c242bd32c0a356a5cb-dirty
author bebatut
date Thu, 05 Nov 2015 10:08:51 -0500
parents f92352296dd7
children 42fb257a4490
files metaphlan2.xml
diffstat 1 files changed, 10 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/metaphlan2.xml	Thu Nov 05 09:38:20 2015 -0500
+++ b/metaphlan2.xml	Thu Nov 05 10:08:51 2015 -0500
@@ -3,12 +3,20 @@
     <description>to profile the composition of microbial communities</description>
 
     <requirements>
-        <requirement type="package" version="2.2.5">bowtie2</requirement>
+        <requirement type="package" version="2.2.4">bowtie2</requirement>
         <requirement type="package" version="2.0">metaphlan2</requirement>
     </requirements>
 
     <stdio>
-        <exit_code range="1:" />
+        <exit_code range="1:" level="fatal"   description="" />
+        <regex match="ERROR"
+               source="stderr"
+               level="fatal"
+               description="" />
+        <regex match="WARNING"
+               source="stderr"
+               level="warning"
+               description="" />
     </stdio>
 
     <version_command>