# HG changeset patch
# User bebatut
# Date 1446736131 18000
# Node ID 54f2ad0c6960dd1885130efd2ae5f932e6bd0036
# Parent  f92352296dd741c164172e93f1f582390150c435
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 8afeda0bbec5217302cc98c242bd32c0a356a5cb-dirty

diff -r f92352296dd7 -r 54f2ad0c6960 metaphlan2.xml
--- a/metaphlan2.xml	Thu Nov 05 09:38:20 2015 -0500
+++ b/metaphlan2.xml	Thu Nov 05 10:08:51 2015 -0500
@@ -3,12 +3,20 @@
     <description>to profile the composition of microbial communities</description>
 
     <requirements>
-        <requirement type="package" version="2.2.5">bowtie2</requirement>
+        <requirement type="package" version="2.2.4">bowtie2</requirement>
         <requirement type="package" version="2.0">metaphlan2</requirement>
     </requirements>
 
     <stdio>
-        <exit_code range="1:" />
+        <exit_code range="1:" level="fatal"   description="" />
+        <regex match="ERROR"
+               source="stderr"
+               level="fatal"
+               description="" />
+        <regex match="WARNING"
+               source="stderr"
+               level="warning"
+               description="" />
     </stdio>
 
     <version_command>