Mercurial > repos > bebatut > humann2_split_table
changeset 1:7b5e36270527 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'38ee3fbdc89e93fa2266e9a4e755a086bf564cc6\n'-dirty
| author | bebatut |
|---|---|
| date | Wed, 01 Mar 2017 11:36:35 -0500 |
| parents | 36a78e81ee4c |
| children | 1ebe07e1acc5 |
| files | repository_dependencies.xml tool-data/metaphlan2_database.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 3 files changed, 10 insertions(+), 1 deletions(-) [+] |
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--- a/repository_dependencies.xml Mon Feb 20 11:33:12 2017 -0500 +++ b/repository_dependencies.xml Wed Mar 01 11:36:35 2017 -0500 @@ -1,4 +1,5 @@ <?xml version="1.0"?> <repositories description="This requires the HUMAnN2 data manager definition to install all required databases."> - <repository changeset_revision="332cb1b3b349" name="data_manager_humann2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="8602983cb86f" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="7b8c3728d7ca" name="data_manager_humann2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </repositories>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/metaphlan2_database.loc.sample Wed Mar 01 11:36:35 2017 -0500 @@ -0,0 +1,4 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of metagenomics files. +#file has this format (white space characters are TAB characters) +#02_16_2014 MetaPhlAn2 clade-specific marker genes db_v20 /path/to/data \ No newline at end of file
--- a/tool_data_table_conf.xml.sample Mon Feb 20 11:33:12 2017 -0500 +++ b/tool_data_table_conf.xml.sample Wed Mar 01 11:36:35 2017 -0500 @@ -1,4 +1,8 @@ <tables> + <table name="metaphlan2_database" comment_char="#"> + <columns>value, name, path</columns> + <file path="tool-data/metaphlan2_database.loc" /> + </table> <table name="humann2_nucleotide_database" comment_char="#"> <columns>value, name, dbkey, path</columns> <file path="tool-data/humann2_nucleotide_database.loc" />