# HG changeset patch
# User bebatut
# Date 1488386195 18000
# Node ID 7b5e362705270087482a67a1a597ad0d002fab01
# Parent  36a78e81ee4ccdf2e091ffcb8560c85a0f62e276
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'38ee3fbdc89e93fa2266e9a4e755a086bf564cc6\n'-dirty

diff -r 36a78e81ee4c -r 7b5e36270527 repository_dependencies.xml
--- a/repository_dependencies.xml	Mon Feb 20 11:33:12 2017 -0500
+++ b/repository_dependencies.xml	Wed Mar 01 11:36:35 2017 -0500
@@ -1,4 +1,5 @@
 <?xml version="1.0"?>
 <repositories description="This requires the HUMAnN2 data manager definition to install all required databases.">
-    <repository changeset_revision="332cb1b3b349" name="data_manager_humann2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="8602983cb86f" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="7b8c3728d7ca" name="data_manager_humann2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 </repositories>
diff -r 36a78e81ee4c -r 7b5e36270527 tool-data/metaphlan2_database.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/metaphlan2_database.loc.sample	Wed Mar 01 11:36:35 2017 -0500
@@ -0,0 +1,4 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of metagenomics files.  
+#file has this format (white space characters are TAB characters)
+#02_16_2014	 MetaPhlAn2 clade-specific marker genes	db_v20	/path/to/data
\ No newline at end of file
diff -r 36a78e81ee4c -r 7b5e36270527 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Mon Feb 20 11:33:12 2017 -0500
+++ b/tool_data_table_conf.xml.sample	Wed Mar 01 11:36:35 2017 -0500
@@ -1,4 +1,8 @@
 <tables>
+    <table name="metaphlan2_database" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/metaphlan2_database.loc" />
+    </table>
     <table name="humann2_nucleotide_database" comment_char="#">
         <columns>value, name, dbkey, path</columns>
         <file path="tool-data/humann2_nucleotide_database.loc" />