Mercurial > repos > bebatut > cdhit
changeset 2:aa923171e225 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit 8b1037213553ecffa32f15a499407cba816ab62b-dirty
author | bebatut |
---|---|
date | Thu, 14 Apr 2016 09:24:49 -0400 |
parents | 2f0a6f227f87 |
children | 626cd6334dbc |
files | cd_hit_est.xml cd_hit_protein.xml cdhit_macros.xml tool_dependencies.xml |
diffstat | 4 files changed, 12 insertions(+), 10 deletions(-) [+] |
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--- a/cd_hit_est.xml Tue Apr 12 02:54:39 2016 -0400 +++ b/cd_hit_est.xml Thu Apr 14 09:24:49 2016 -0400 @@ -1,13 +1,11 @@ -<tool id="cd_hit_est" name="CD-HIT-EST" version="1.2"> +<tool id="cd_hit_est" name="CD-HIT-EST" version="1.3"> <description>Cluster a nucleotide dataset into representative sequences</description> <macros> <import>cdhit_macros.xml</import> </macros> - <requirements> - <requirement type="package" version="4.6.1">cd-hit</requirement> - </requirements> + <expand macro="requirements"/> <command><![CDATA[ cd-hit-est
--- a/cd_hit_protein.xml Tue Apr 12 02:54:39 2016 -0400 +++ b/cd_hit_protein.xml Thu Apr 14 09:24:49 2016 -0400 @@ -1,13 +1,11 @@ -<tool id="cd_hit_protein" name="CD-HIT PROTEIN" version="1.2"> +<tool id="cd_hit_protein" name="CD-HIT PROTEIN" version="1.3"> <description>Cluster a protein dataset into representative sequences</description> <macros> <import>cdhit_macros.xml</import> </macros> - <requirements> - <requirement type="package" version="4.6.1">cd-hit</requirement> - </requirements> + <expand macro="requirements"/> <command><![CDATA[ cd-hit
--- a/cdhit_macros.xml Tue Apr 12 02:54:39 2016 -0400 +++ b/cdhit_macros.xml Thu Apr 14 09:24:49 2016 -0400 @@ -1,4 +1,10 @@ <macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="4.6.4">cd-hit</requirement> + </requirements> + </xml> + <template name="common_cdhit_options"> <!-- start common cdhit options -->
--- a/tool_dependencies.xml Tue Apr 12 02:54:39 2016 -0400 +++ b/tool_dependencies.xml Thu Apr 14 09:24:49 2016 -0400 @@ -1,9 +1,9 @@ <?xml version="1.0"?> <tool_dependency> - <package name="cd-hit" version="4.6.1"> + <package name="cd-hit" version="4.6.4"> <install version="1.0"> <actions> - <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> + <action type="download_by_url" md5="d4baba1e95ba9c831a763c6b8a19ce21">https://github.com/weizhongli/cdhit/releases/download/V4.6.4/cd-hit-v4.6.4-2015-0603.tar.gz</action> <action type="shell_command">make</action> <action type="move_file"> <source>cd-hit</source>