Mercurial > repos > bebatut > cdhit
view tool_dependencies.xml @ 2:aa923171e225 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit 8b1037213553ecffa32f15a499407cba816ab62b-dirty
author | bebatut |
---|---|
date | Thu, 14 Apr 2016 09:24:49 -0400 |
parents | 617a5f3baf7f |
children | 626cd6334dbc |
line wrap: on
line source
<?xml version="1.0"?> <tool_dependency> <package name="cd-hit" version="4.6.4"> <install version="1.0"> <actions> <action type="download_by_url" md5="d4baba1e95ba9c831a763c6b8a19ce21">https://github.com/weizhongli/cdhit/releases/download/V4.6.4/cd-hit-v4.6.4-2015-0603.tar.gz</action> <action type="shell_command">make</action> <action type="move_file"> <source>cd-hit</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> <source>cd-hit-est</source> <destination>$INSTALL_DIR</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable> </action> </actions> </install> <readme> These links provide information for building the cdhit package: http://weizhong-lab.ucsd.edu/cd-hit/ https://code.google.com/p/cdhit/ https://code.google.com/p/cdhit/source/browse/README Change the CDHIT_SITE_OPTIONS variable in the installed env.sh file to adjust the maximum memory Mb (-M) or to limit the number of threads (-T) to match your site </readme> </package> </tool_dependency>