Mercurial > repos > bebatut > cdhit
view tool_dependencies.xml @ 0:617a5f3baf7f draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit 822c081d971c1fa6eef307936fb07dcf9d5db1c5-dirty
author | bebatut |
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date | Mon, 14 Dec 2015 04:19:46 -0500 |
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children | aa923171e225 |
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<?xml version="1.0"?> <tool_dependency> <package name="cd-hit" version="4.6.1"> <install version="1.0"> <actions> <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> <action type="shell_command">make</action> <action type="move_file"> <source>cd-hit</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> <source>cd-hit-est</source> <destination>$INSTALL_DIR</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable> </action> </actions> </install> <readme> These links provide information for building the cdhit package: http://weizhong-lab.ucsd.edu/cd-hit/ https://code.google.com/p/cdhit/ https://code.google.com/p/cdhit/source/browse/README Change the CDHIT_SITE_OPTIONS variable in the installed env.sh file to adjust the maximum memory Mb (-M) or to limit the number of threads (-T) to match your site </readme> </package> </tool_dependency>