Mercurial > repos > artbio > manta
changeset 1:0e7a9942599d draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 4d77b1bf3be3afa153984b60f8a19b245ad973f7"
| author | artbio |
|---|---|
| date | Tue, 12 May 2020 17:34:19 +0000 |
| parents | 964768ef63f4 |
| children | de04a3371091 |
| files | manta_macros.xml tool-data/manta_index.loc tool_data_table_conf.xml |
| diffstat | 3 files changed, 22 insertions(+), 1 deletions(-) [+] |
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--- a/manta_macros.xml Tue May 12 14:07:23 2020 +0000 +++ b/manta_macros.xml Tue May 12 17:34:19 2020 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@VERSION@">1.6</token> - <token name="@WRAPPER_VERSION@">@VERSION@+galaxy1</token> + <token name="@WRAPPER_VERSION@">@VERSION@+galaxy2</token> <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token> <token name="@set_reference_fasta_filename@"><![CDATA[
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/manta_index.loc Tue May 12 17:34:19 2020 +0000 @@ -0,0 +1,15 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). +This file has the format (white space characters are TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, it could look something like this: +# +#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa +#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa +# +#Your .loc file should contain an entry for each individual +#fasta file. So there will be multiple fasta files for each build, +#such as with hg19 above.