# HG changeset patch
# User artbio
# Date 1589304859 0
# Node ID 0e7a9942599d9f4c888ab01c09b29fc554e6bef5
# Parent  964768ef63f48200b9ad229a978ed6e672177c63
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 4d77b1bf3be3afa153984b60f8a19b245ad973f7"

diff -r 964768ef63f4 -r 0e7a9942599d manta_macros.xml
--- a/manta_macros.xml	Tue May 12 14:07:23 2020 +0000
+++ b/manta_macros.xml	Tue May 12 17:34:19 2020 +0000
@@ -1,7 +1,7 @@
 <macros>
 
     <token name="@VERSION@">1.6</token>
-    <token name="@WRAPPER_VERSION@">@VERSION@+galaxy1</token>
+    <token name="@WRAPPER_VERSION@">@VERSION@+galaxy2</token>
     <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token>
 
     <token name="@set_reference_fasta_filename@"><![CDATA[
diff -r 964768ef63f4 -r 0e7a9942599d tool-data/manta_index.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/manta_index.loc	Tue May 12 17:34:19 2020 +0000
@@ -0,0 +1,15 @@
+#This file lists the locations and dbkeys of all the fasta files
+#under the "genome" directory (a directory that contains a directory
+#for each build). 
+This file has the format (white space characters are TAB characters):
+#
+#<unique_build_id>      <dbkey>         <display_name>  <file_path>
+#
+#So, it could look something like this:
+#
+#hg19canon      hg19            Human (Homo sapiens): hg19 Canonical            /path/to/genome/hg19/hg19canon.fa
+#hg19full       hg19            Human (Homo sapiens): hg19 Full                 /path/to/genome/hg19/hg19full.fa
+#
+#Your .loc file should contain an entry for each individual
+#fasta file. So there will be multiple fasta files for each build,
+#such as with hg19 above.
diff -r 964768ef63f4 -r 0e7a9942599d tool_data_table_conf.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml	Tue May 12 17:34:19 2020 +0000
@@ -0,0 +1,6 @@
+<tables>
+    <table name="manta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/manta_index.loc" />
+    </table>
+</tables>