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1 <tool id="Mydynamicscript" name="Mydynamicscript" version="0.01">
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2 <description>Test</description>
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3 <command interpreter="python">
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4 Mydynamicscript.py --script_path "$runMe" --interpreter "perl"
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5 --tool_name "Mydynamicscript" --output_tab "$tab_file"
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6 </command>
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7 <inputs>
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8 <param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="Mydynamicscript"/>
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9
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10 </inputs>
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11 <outputs>
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12 <data format="tabular" name="tab_file" label="${job_name}"/>
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13
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14 </outputs>
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15 <configfiles>
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16 <configfile name="runMe">
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17 <![CDATA[
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18 #!/usr/bin/perl -w
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19 \$a=1; \$b=2;
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20 \$c=\$a+\$b;
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21 print \$c;
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22 exit;
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23 ]]>
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24 </configfile>
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25 </configfiles>
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26 <tests><test>
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27 <param name="input1" value="Mydynamicscript_test1_input.xls" ftype="tabular"/>
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28 <param name="job_name" value="test1"/>
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29 <param name="runMe" value="$runMe"/>
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30 <output name="tab_file" file="Mydynamicscript_test1_output.xls" ftype="tabular"/>
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31 </test></tests>
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32 <help>
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33 <![CDATA[
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34
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35 **What it Does**
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36 test
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37
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38
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39 **Script**
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40 Pressing execute will run the following code over your input file and generate some outputs in your history::
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41
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42 #!/usr/bin/perl -w
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43 $a=1; $b=2;
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44 $c=$a+$b;
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45 print $c;
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46 exit;
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47
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48
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49
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50 **Attribution** This Galaxy tool was created by anshub@osdd.net at 10/07/2013 22:07:26
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51 using the Galaxy Tool Factory.
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52 See https://bitbucket.org/fubar/galaxytoolfactory for details of that project
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53 Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team.
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54 Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573
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55
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56
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57 ]]>
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58
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59 </help>
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60 </tool>
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