diff Mydynamicscript/Mydynamicscript.xml @ 1:bd70557994fa draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Mydynamicscript/Mydynamicscript.xml	Tue Jul 16 03:42:09 2013 -0400
@@ -0,0 +1,60 @@
+<tool id="Mydynamicscript" name="Mydynamicscript" version="0.01">
+<description>Test</description>
+<command interpreter="python">
+            Mydynamicscript.py --script_path "$runMe" --interpreter "perl" 
+            --tool_name "Mydynamicscript"   --output_tab "$tab_file" 
+            </command>
+<inputs>
+<param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="Mydynamicscript"/> 
+
+</inputs>
+<outputs>
+ <data format="tabular" name="tab_file" label="${job_name}"/>
+
+</outputs>
+<configfiles>
+<configfile name="runMe">
+<![CDATA[   
+#!/usr/bin/perl -w
+\$a=1; \$b=2;
+\$c=\$a+\$b;
+print \$c;
+exit;
+]]>
+</configfile>
+</configfiles>
+<tests><test>
+        <param name="input1" value="Mydynamicscript_test1_input.xls" ftype="tabular"/>
+        <param name="job_name" value="test1"/>
+        <param name="runMe" value="$runMe"/>
+        <output name="tab_file" file="Mydynamicscript_test1_output.xls" ftype="tabular"/>
+        </test></tests>
+<help>
+<![CDATA[   
+
+**What it Does**
+test
+
+
+**Script**
+Pressing execute will run the following code over your input file and generate some outputs in your history::
+
+ #!/usr/bin/perl -w
+ $a=1; $b=2;
+ $c=$a+$b;
+ print $c;
+ exit;
+
+
+
+**Attribution** This Galaxy tool was created by [e-mail] at 10/07/2013 22:07:26
+using the Galaxy Tool Factory.
+See https://bitbucket.org/fubar/galaxytoolfactory for details of that project
+Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. 
+Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573
+
+
+]]>
+
+</help>
+</tool>