Mercurial > repos > abims-sbr > pogs

annotate test-data/2_pogs.output @ 8:3fbf4e4d111e draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
author abims-sbr
date Tue, 27 Feb 2018 08:41:45 -0500
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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1 *** pogs.py ***
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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3 Building of orthogroups based on pairs of genes obtained by pairwise comparisons between pairs of species.
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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4 Genes are gathered in orthogroups based on the principle of transitivity between genes pairs.
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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5
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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6 Parsing input files ...
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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7 Creating Orthogroups ...
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
abims-sbr
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9 Summary before paralogous filtering :
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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11 2 sps 3 sps 4 sps
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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12 2 seqs 1394 0 0
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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13 3 seqs 0 163 0
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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14 4 seqs 0 26 33
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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15 5 seqs 0 3 17
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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16 6 seqs 0 0 17
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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17 7 seqs 0 0 7
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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18 8 seqs 0 0 2
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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19 11 seqs 0 0 1
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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20 13 seqs 0 0 1
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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22 Filtering paralogous sequences and writing final orthogroups files ...
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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23 (Dropping Orthogroups with less than 3 species)
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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25 Summary after paralogous filtering :
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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27 3 sps 4 sps
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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28 3 seqs 192 0
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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29 4 seqs 0 78
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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31 270 orthogroups have been infered from 6 pairwise comparisons by RBH
3fbf4e4d111e planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
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