view test-data/2_pogs.output @ 8:3fbf4e4d111e draft

planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 17acd02c547bd1f7661a846661aa99de9743efe9

*** pogs.py ***

Building of orthogroups based on pairs of genes obtained by pairwise comparisons between pairs of species.
Genes are gathered in orthogroups based on the principle of transitivity between genes pairs.

Parsing input files ...
Creating Orthogroups ...

    Summary before paralogous filtering : 

         2 sps  3 sps  4 sps
2 seqs    1394      0      0
3 seqs       0    163      0
4 seqs       0     26     33
5 seqs       0      3     17
6 seqs       0      0     17
7 seqs       0      0      7
8 seqs       0      0      2
11 seqs      0      0      1
13 seqs      0      0      1 

Filtering paralogous sequences and writing final orthogroups files ...
    (Dropping Orthogroups with less than 3 species)

    Summary after paralogous filtering : 

        3 sps  4 sps
3 seqs    192      0
4 seqs      0     78

270 orthogroups have been infered from 6 pairwise comparisons by RBH