Mercurial > repos > abims-sbr > cds_search

annotate scripts/dico.py @ 3:ff98ed7849fa draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
author abims-sbr
date Wed, 17 Jan 2018 08:55:29 -0500
parents
children 35e39b4128ba
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
1 import string
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
2
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
3 def dico(F1):
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
4 dicoco = {}
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
5 while 1:
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
6 next2 = F1.readline()
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
7 if not next2:
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
8 break
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
9 if next2[0] == ">":
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
10 fasta_name_query = next2[:-1]
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
11 Sn = string.split(fasta_name_query, "||")
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
12 fasta_name_query = Sn[0]
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
13 next3 = F1.readline()
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
14 fasta_seq_query = next3[:-1]
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
15 dicoco[fasta_name_query]=fasta_seq_query
ff98ed7849fa planemo upload for repository https://github.com/abims-sbr/adaptsearch commit cf1b9c905931ca2ca25faa4844d45c908756472f
abims-sbr
parents:
diff changeset
16 return(dicoco)