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view ncbi_blast_plus/tool_dependencies.xml @ 21:6902315b7730 draft

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Uploaded v0.0.20pre12, try downloading platform specific binaries
author peterjc
date Mon, 05 Aug 2013 12:39:59 -0400
parents 688f3fb09a6a
children 9b8b2817f411
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<?xml version="1.0"?>
<tool_dependency>
    <package name="blast+" version="2.2.26+">
        <install version="1.0">
            <actions>
                <action type="download_by_url">
                    <url_template os="linux" architecture="x86_64">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</url_template>
                    <url_template os="linux" architecture="i386">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</url_template>
                    <url_template os="linux" architecture="i686">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</url_template>
                    <url_template os="darwin">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</url_template>
                </action>
                <action type="move_directory_files">
                    <!-- Galaxy will have changed directory into ncbi-blast-2.2.26+/ -->		  
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X  BLAST+
binaries from the NCBI, which is faster than performing a local compliation,
avoids any issues with build dependencies, and is more reproducible between
installations as there is no variability from the compiler or library versions.

For more details, see:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
        </readme>
    </package>
</tool_dependency>